| AEBP1 | AE binding protein 1 | 20 |
| MLLT1 | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 | 10 |
| ALX3 | ALX homeobox 3 | 10 |
| ALX4 | ALX homeobox 4 | 230 |
| TEX2 | transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) | 1 |
| TF | transcription factor AP-2 beta (activating enhancer binding protein 2 beta) | 675 |
| TFAP2A | transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) | 10 |
| TFAP2B | transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon) | 10 |
| ARID3A | AT rich interactive domain 3A (BRIGHT-like) | 1 |
| ARNTL | aryl hydrocarbon receptor nuclear translocator | 1 |
| ARX | aristaless related homeobox | 29 |
| ASCL1 | achaete-scute complex homolog 1 (Drosophila) | 20 |
| ASCL2 | achaete-scute complex homolog 2 (Drosophila) | 44 |
| ATOH1 | atonal homolog 1 (Drosophila) | 1 |
| BARHL1 | BarH-like homeobox 1 | 31 |
| BARHL2 | BarH-like homeobox 2 | 49 |
| BARX1 | BARX homeobox 1 | 10 |
| BARX2 | BARX homeobox 2 | 9 |
| BCL11B | B-cell CLL/lymphoma 11B (zinc finger protein) | 10 |
| BCL6 | B-cell CLL/lymphoma 6 | 1 |
| BHLHE22 | basic helix-loop-helix family, member e22 | 10 |
| BHLHB5 | basic helix-loop-helix family, member e22 | 20 |
| ARNT | aryl hydrocarbon receptor nuclear translocator-like | 10 |
| BNC1 | basonuclin 1 | 150 |
| TM6SF1 | T, brachyury homolog (mouse) | 22 |
| T | T, brachyury homolog (mouse) | 25493 |
| BSX | brain-specific homeobox | 1 |
| BUD31 | BUD31 homolog (S. cerevisiae) | 1 |
| CREBBP | CREB binding protein | 13 |
| CDX2 | caudal type homeobox 2 | 10 |
| CEBPA | CCAAT/enhancer binding protein (C/EBP), alpha | 13 |
| CEBPD | CCAAT/enhancer binding protein (C/EBP), delta | 1 |
| CEBPE | CCAAT/enhancer binding protein (C/EBP), epsilon | 20 |
| CEBPG | CCAAT/enhancer binding protein (C/EBP), gamma | 1 |
| CITED1 | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 | 1 |
| EBF1 | early B-cell factor 1 | 10 |
| NR2F1 | nuclear receptor subfamily 2, group F, member 1 | 10 |
| NR2F2 | nuclear receptor subfamily 2, group F, member 2 | 10 |
| CREB3L1 | cAMP responsive element binding protein 3-like 1 | 10 |
| CREB1 | cAMP responsive element binding protein 1 | 9 |
| CREB5 | cAMP responsive element binding protein 5 | 1 |
| CREM | cAMP responsive element modulator | 1 |
| CTBP1 | C-terminal binding protein 1 | 10 |
| CUX2 | cut-like homeobox 2 | 1 |
| CUTL2 | cut-like homeobox 2 | 50 |
| DBX1 | developing brain homeobox 1 | 11 |
| DBX2 | developing brain homeobox 2 | 10 |
| DLX1 | distal-less homeobox 1 | 30 |
| DLX2 | distal-less homeobox 2 | 10 |
| DLX4 | distal-less homeobox 4 | 11 |
| DLX5 | distal-less homeobox 5 | 70 |
| DMRT1 | doublesex and mab-3 related transcription factor 1 | 51 |
| DMRT2 | doublesex and mab-3 related transcription factor 2 | 30 |
| DRGX | dorsal root ganglia homeobox | 9 |
| E2F3 | E2F transcription factor 3 | 1 |
| E2F5 | E2F transcription factor 5, p130-binding | 14 |
| E4F1 | E4F transcription factor 1 | 1 |
| EGR1 | early growth response 1 | 29 |
| EGR2 | early growth response 2 | 1 |
| EGR3 | early growth response 3 | 10 |
| EGR4 | early growth response 4 | 25 |
| ELF4 | E74-like factor 4 (ets domain transcription factor) | 10 |
| ELK1 | ELK1, member of ETS oncogene family | 10 |
| EMX1 | empty spiracles homeobox 1 | 10 |
| EMX2 | empty spiracles homeobox 2 | 32 |
| ENO1 | enolase 1, (alpha) | 1 |
| ERG | v-ets erythroblastosis virus E26 oncogene homolog (avian) | 52 |
| ESRRB | estrogen-related receptor beta | 10 |
| ESR1 | estrogen receptor 1 | 109 |
| ESX1 | ESX homeobox 1 | 1 |
| EVX1 | even-skipped homeobox 1 | 50 |
| EVX2 | even-skipped homeobox 2 | 10 |
| FEV | FEV (ETS oncogene family) | 1 |
| FLI1 | Friend leukemia virus integration 1 | 43 |
| ZFPM1 | zinc finger protein, FOG family member 1 | 1 |
| ZFPM2 | zinc finger protein, FOG family member 2 | 1 |
| FOS | FBJ murine osteosarcoma viral oncogene homolog | 9 |
| FOXA1 | forkhead box A1 | 10 |
| FOXA2 | forkhead box A2 | 10 |
| FOXB1 | forkhead box B1 | 40 |
| FOXB2 | forkhead box B2 | 9 |
| FOXC2 | forkhead box C2 (MFH-1, mesenchyme forkhead 1) | 10 |
| FOXD1 | forkhead box D1 | 9 |
| FOXD2 | forkhead box D2 | 10 |
| FOXD3 | forkhead box D3 | 30 |
| FOXE1 | forkhead box E1 (thyroid transcription factor 2) | 39 |
| FOXE3 | forkhead box E3 | 30 |
| FOXF2 | forkhead box F2 | 30 |
| FOXG1 | forkhead box G1 | 59 |
| FOXG1B | forkhead box G1 | 40 |
| FOXI1 | forkhead box I1 | 30 |
| FOXI2 | forkhead box I2 | 10 |
| FLJ46831 | forkhead box I2 | 1 |
| FOXJ1 | forkhead box J1 | 11 |
| FOXK1 | forkhead box K1 | 1 |
| FOXL1 | forkhead box L1 | 10 |
| FOXL2 | forkhead box L2 | 49 |
| FOXN4 | forkhead box N4 | 9 |
| FOXQ1 | forkhead box Q1 | 10 |
| FOXR1 | forkhead box R1 | 1 |
| FKHL18 | forkhead box S1 | 1 |
| GAS7 | growth arrest-specific 7 | 34 |
| GATA2 | GATA binding protein 2 | 31 |
| GATA3 | GATA binding protein 3 | 11 |
| GATA4 | GATA binding protein 4 | 21 |
| GATA5 | GATA binding protein 5 | 10 |
| GATA6 | GATA binding protein 6 | 1 |
| GBX2 | gastrulation brain homeobox 2 | 49 |
| GLI2 | GLI family zinc finger 2 | 13 |
| GLIS3 | GLIS family zinc finger 3 | 10 |
| GRHL3 | grainyhead-like 3 (Drosophila) | 2 |
| GSC | goosecoid homeobox 2 | 40 |
| GSCL | goosecoid homeobox 2 | 20 |
| GSC2 | goosecoid homeobox | 10 |
| GSX1 | GS homeobox 1 | 10 |
| GSH1 | GS homeobox 1 | 20 |
| GSX2 | GS homeobox 2 | 1 |
| GSH2 | GS homeobox 2 | 9 |
| HAND2 | heart and neural crest derivatives expressed 2 | 30 |
| HCFC1 | host cell factor C1 (VP16-accessory protein) | 9 |
| HDAC1 | histone deacetylase 1 | 13 |
| HELT | helt bHLH transcription factor | 10 |
| HES5 | hairy and enhancer of split 5 (Drosophila) | 1 |
| HEY1 | hairy/enhancer-of-split related with YRPW motif 1 | 9 |
| HEYL | hairy/enhancer-of-split related with YRPW motif-like | 20 |
| HHEX | hematopoietically expressed homeobox | 1 |
| HIC1 | hypermethylated in cancer 1 | 26 |
| HLF | hepatic leukemia factor | 20 |
| HLX | H2.0-like homeobox | 9 |
| EN1 | engrailed homeobox 1 | 34 |
| EN2 | engrailed homeobox 2 | 20 |
| HMX2 | H6 family homeobox 2 | 11 |
| HMX3 | H6 family homeobox 3 | 10 |
| TCF2 | HNF1 homeobox B | 44 |
| HNF4A | hepatocyte nuclear factor 4, alpha | 20 |
| ONECUT1 | one cut homeobox 1 | 10 |
| HOPX | HOP homeobox | 10 |
| HSF4 | heat shock transcription factor 4 | 11 |
| HSF5 | heat shock transcription factor family member 5 | 1 |
| TCERG1L | transcription factor 12 | 10 |
| HOXA1 | homeobox A10 | 116 |
| HOXA10 | homeobox A11 | 30 |
| HOXA11 | homeobox A13 | 44 |
| HOXA13 | homeobox A1 | 1 |
| HOXA3 | homeobox A3 | 1 |
| HOXA4 | homeobox A4 | 30 |
| HOXA5 | homeobox A5 | 51 |
| HOXA6 | homeobox A6 | 2 |
| HOXA7 | homeobox A7 | 30 |
| HOXA9 | homeobox A9 | 123 |
| HOXB1 | homeobox B13 | 38 |
| HOXB13 | homeobox B1 | 29 |
| HOXB2 | homeobox B2 | 1 |
| HOXB3 | homeobox B3 | 10 |
| HOXB4 | homeobox B4 | 160 |
| HOXB5 | homeobox B5 | 29 |
| HOXB6 | homeobox B6 | 29 |
| HOXB7 | homeobox B7 | 1 |
| HOXB8 | homeobox B8 | 20 |
| HOXB9 | homeobox B9 | 10 |
| HOXC11 | homeobox C11 | 30 |
| HOXC12 | homeobox C12 | 54 |
| HOXC13 | homeobox C13 | 30 |
| HOXC4 | homeobox C4 | 11 |
| HOXC5 | homeobox C5 | 9 |
| HOXC9 | homeobox C9 | 41 |
| HOXD1 | homeobox D10 | 192 |
| HOXD10 | homeobox D11 | 31 |
| HOXD11 | homeobox D12 | 31 |
| HOXD12 | homeobox D13 | 50 |
| HOXD13 | homeobox D1 | 50 |
| HOXD3 | homeobox D3 | 1 |
| HOXD4 | homeobox D4 | 50 |
| HOXD8 | homeobox D8 | 29 |
| HOXD9 | homeobox D9 | 50 |
| ID1 | inhibitor of DNA binding 1, dominant negative helix-loop-helix protein | 48 |
| IKZF1 | IKAROS family zinc finger 1 (Ikaros) | 1 |
| IRF3 | interferon regulatory factor 3 | 1 |
| IRF4 | interferon regulatory factor 4 | 30 |
| IRF5 | interferon regulatory factor 5 | 9 |
| IRF7 | interferon regulatory factor 7 | 30 |
| IRX1 | iroquois homeobox 1 | 10 |
| IRX2 | iroquois homeobox 2 | 50 |
| IRX3 | iroquois homeobox 3 | 10 |
| IRX4 | iroquois homeobox 4 | 51 |
| IRX5 | iroquois homeobox 5 | 10 |
| IRX6 | iroquois homeobox 6 | 10 |
| ISL1 | ISL LIM homeobox 1 | 1 |
| ISL2 | ISL LIM homeobox 2 | 11 |
| TCF21 | transcription factor 4 | 30 |
| JUNB | jun B proto-oncogene | 9 |
| KDM1 | lysine (K)-specific demethylase 1A | 1 |
| KDM3A | lysine (K)-specific demethylase 3A | 1 |
| KL | Kruppel-like factor 10 | 279 |
| KLF14 | Kruppel-like factor 16 | 1 |
| KLF16 | Kruppel-like factor 9 | 10 |
| LBX1 | ladybird homeobox 1 | 31 |
| LBX2 | ladybird homeobox 2 | 10 |
| LHX1 | LIM homeobox 1 | 95 |
| LHX2 | LIM homeobox 2 | 41 |
| LHX3 | LIM homeobox 3 | 11 |
| LHX4 | LIM homeobox 4 | 10 |
| LHX5 | LIM homeobox 5 | 50 |
| LHX6 | LIM homeobox 6 | 10 |
| LHX8 | LIM homeobox 8 | 10 |
| LHX9 | LIM homeobox 9 | 10 |
| LMO4 | LIM domain only 4 | 1 |
| LMX1A | LIM homeobox transcription factor 1, alpha | 75 |
| LMX1B | LIM homeobox transcription factor 1, beta | 31 |
| LZTS1 | leucine zipper, putative tumor suppressor 1 | 20 |
| MAF | v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian) | 41 |
| MAFA | v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) | 1 |
| MAFB | v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian) | 29 |
| MAFF | v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) | 1 |
| MEIS1 | Meis homeobox 1 | 9 |
| MEIS2 | Meis homeobox 2 | 1 |
| MEOX1 | mesenchyme homeobox 1 | 10 |
| MGA | MGA, MAX dimerization protein | 42 |
| MKX | mohawk homeobox | 10 |
| MMP11 | matrix metallopeptidase 14 (membrane-inserted) | 20 |
| MNX1 | motor neuron and pancreas homeobox 1 | 9 |
| C11orf9 | myelin regulatory factor | 11 |
| MSL3 | male-specific lethal 3 homolog (Drosophila) | 11 |
| MSL3L1 | male-specific lethal 3 homolog (Drosophila) | 9 |
| MSX1 | msh homeobox 1 | 129 |
| MSX2 | msh homeobox 2 | 1 |
| CBFA2T3 | core-binding factor, runt domain, alpha subunit 2; translocated to, 3 | 10 |
| MSC | musculin | 21 |
| MYB | v-myb myeloblastosis viral oncogene homolog (avian) | 10 |
| MYCN | v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) | 2 |
| MYOD1 | myogenic differentiation 1 | 104 |
| MYT1L | myelin transcription factor 1-like | 1 |
| MZF1 | myeloid zinc finger 1 | 10 |
| NEUROD1 | neuronal differentiation 1 | 49 |
| NEUROD2 | neuronal differentiation 2 | 20 |
| NFATC1 | nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 | 11 |
| NFATC2 | nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 | 9 |
| NFATC4 | nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 | 1 |
| NFIA | nuclear factor I/A | 1 |
| NFIC | nuclear factor I/C (CCAAT-binding transcription factor) | 10 |
| NFIL3 | nuclear factor, interleukin 3 regulated | 1 |
| NFIX | nuclear factor I/X (CCAAT-binding transcription factor) | 1 |
| NFYA | nuclear transcription factor Y, alpha | 1 |
| NEUROG1 | neurogenin 1 | 91 |
| NGN1 | neurogenin 1 | 24 |
| NEUROG3 | neurogenin 3 | 30 |
| NKX1-2 | NK1 homeobox 2 | 1 |
| NKX2-1 | NK2 homeobox 1 | 10 |
| TITF1 | NK2 homeobox 1 | 20 |
| NKX2-2 | NK2 homeobox 2 | 30 |
| NKX2-3 | NK2 homeobox 3 | 9 |
| NKX2-4 | NK2 homeobox 4 | 1 |
| NKX2-5 | NK2 homeobox 5 | 30 |
| NKX2-6 | NK2 homeobox 6 | 10 |
| NKX2-8 | NK2 homeobox 8 | 45 |
| NKX3-2 | NK3 homeobox 2 | 10 |
| BAPX1 | NK3 homeobox 2 | 20 |
| NKX6-1 | NK6 homeobox 1 | 0 |
| NKX6-2 | NK6 homeobox 2 | 10 |
| NOTCH1 | notch 1 | 1 |
| NOTO | notochord homeobox | 1 |
| NPAS1 | neuronal PAS domain protein 1 | 29 |
| NR0B1 | nuclear receptor subfamily 0, group B, member 1 | 1 |
| NR1D1 | nuclear receptor subfamily 1, group D, member 1 | 1 |
| NR1I2 | nuclear receptor subfamily 1, group I, member 2 | 10 |
| NR1I3 | nuclear receptor subfamily 1, group I, member 3 | 20 |
| NR2E1 | nuclear receptor subfamily 2, group E, member 1 | 31 |
| NR2F6 | nuclear receptor subfamily 2, group F, member 6 | 1 |
| NR4A3 | nuclear receptor subfamily 4, group A, member 3 | 10 |
| NR5A2 | nuclear receptor subfamily 5, group A, member 2 | 10 |
| NR6A1 | nuclear receptor subfamily 6, group A, member 1 | 1 |
| OLIG2 | oligodendrocyte lineage transcription factor 2 | 29 |
| ONECUT2 | one cut homeobox 2 | 10 |
| ONECUT3 | one cut homeobox 3 | 10 |
| OTP | orthopedia homeobox | 10 |
| OTX1 | orthodenticle homeobox 1 | 10 |
| OTX2 | orthodenticle homeobox 2 | 9 |
| TP53 | tumor protein p53 | 2 |
| GATAD2A | GATA zinc finger domain containing 2A | 1 |
| TP73 | tumor protein p73 | 100 |
| p73 | tumor protein p73 | 88 |
| P73 | tumor protein p73 | 156 |
| PAX3 | paired box 3 | 31 |
| PAX5 | paired box 5 | 48 |
| PAX6 | paired box 6 | 16 |
| PAX7 | paired box 7 | 51 |
| PAX8 | paired box 8 | 10 |
| PBX3 | pre-B-cell leukemia homeobox 3 | 1 |
| PDX1 | pancreatic and duodenal homeobox 1 | 10 |
| PTGER3 | prostaglandin E receptor 3 (subtype EP3) | 30 |
| PEG3 | paternally expressed 3 | 1 |
| PHOX2A | paired-like homeobox 2a | 51 |
| PHOX2B | paired-like homeobox 2b | 10 |
| PITX1 | paired-like homeodomain 1 | 10 |
| PITX2 | paired-like homeodomain 2 | 63 |
| PITX3 | paired-like homeodomain 3 | 10 |
| PKNOX2 | PBX/knotted 1 homeobox 2 | 10 |
| PLAGL1 | pleiomorphic adenoma gene-like 1 | 1 |
| POU2F2 | POU class 2 homeobox 2 | 1 |
| POU3F1 | POU class 3 homeobox 1 | 30 |
| POU3F2 | POU class 3 homeobox 2 | 30 |
| POU3F3 | POU class 3 homeobox 3 | 30 |
| POU3F4 | POU class 3 homeobox 4 | 11 |
| POU4F1 | POU class 4 homeobox 1 | 41 |
| POU4F2 | POU class 4 homeobox 2 | 49 |
| POU4F3 | POU class 4 homeobox 3 | 51 |
| POU6F2 | POU class 6 homeobox 2 | 20 |
| PPARD | peroxisome proliferator-activated receptor delta | 13 |
| PPARGC1B | peroxisome proliferator-activated receptor gamma | 1 |
| PGR | progesterone receptor | 12 |
| PROP1 | PROP paired-like homeobox 1 | 9 |
| PRRX1 | paired related homeobox 1 | 21 |
| PTF1A | pancreas specific transcription factor, 1a | 51 |
| RARA | retinoic acid receptor, alpha | 96 |
| MGC15631 | retina and anterior neural fold homeobox 2 | 1 |
| RBPJ | recombination signal binding protein for immunoglobulin kappa J region-like | 2 |
| RCOR2 | REST corepressor 2 | 9 |
| REST | RE1-silencing transcription factor | 1 |
| MUC2 CpG3 | mucin 2, oligomeric mucus/gel-forming | 22 |
| RFX1 | regulatory factor X, 1 (influences HLA class II expression) | 1 |
| RORC | RAR-related orphan receptor C | 9 |
| RREB1 | ras responsive element binding protein 1 | 1 |
| RUNX2 | runt-related transcription factor 2 | 1 |
| RUNX3 | runt-related transcription factor 3 | 141 |
| RAX | retina and anterior neural fold homeobox | 55 |
| SLC2A4RG | SLC2A4 regulator | 9 |
| SALL1 | sal-like 1 (Drosophila) | 31 |
| SATB2 | SATB homeobox 2 | 10 |
| SCML2 | sex comb on midleg-like 2 (Drosophila) | 1 |
| SCRT1 | scratch homolog 1, zinc finger protein (Drosophila) | 20 |
| SHOX2 | short stature homeobox 2 | 1 |
| SIM1 | single-minded homolog 1 (Drosophila) | 50 |
| SIM2 | single-minded homolog 2 (Drosophila) | 10 |
| SIN3A | SIN3 transcription regulator homolog A (yeast) | 1 |
| SIX1 | SIX homeobox 1 | 1 |
| SIX2 | SIX homeobox 2 | 11 |
| SIX3 | SIX homeobox 3 | 9 |
| SIX5 | SIX homeobox 5 | 9 |
| SIX6 | SIX homeobox 6 | 30 |
| SNAPC4 | small nuclear RNA activating complex, polypeptide 4, 190kDa | 1 |
| SOHLH1 | spermatogenesis and oogenesis specific basic helix-loop-helix 1 | 1 |
| SOX1 | SRY (sex determining region Y)-box 10 | 229 |
| SOX10 | SRY (sex determining region Y)-box 11 | 1 |
| SOX14 | SRY (sex determining region Y)-box 15 | 31 |
| SOX15 | SRY (sex determining region Y)-box 17 | 51 |
| SOX17 | SRY (sex determining region Y)-box 18 | 43 |
| SOX18 | SRY (sex determining region Y)-box 1 | 9 |
| SOX2 | SRY (sex determining region Y)-box 2 | 2 |
| SOX5 | SRY (sex determining region Y)-box 5 | 44 |
| SOX7 | SRY (sex determining region Y)-box 7 | 10 |
| SOX8 | SRY (sex determining region Y)-box 8 | 20 |
| SPDEF | SAM pointed domain containing ets transcription factor | 13 |
| SPI1 | spleen focus forming virus (SFFV) proviral integration oncogene spi1 | 13 |
| SPIB | Spi-B transcription factor (Spi-1/PU.1 related) | 21 |
| SREBF1 | sterol regulatory element binding transcription factor 1 | 1 |
| NR5A1 | nuclear receptor subfamily 5, group A, member 1 | 10 |
| RBPJL | recombination signal binding protein for immunoglobulin kappa J region | 1 |
| TMEM229A | transmembrane protein 229A | 9 |
| TSC22D3 | TSC22 domain family, member 3 | 10 |
| TAF1 | TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa | 1 |
| TAF4 | TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa | 10 |
| TAGLN | T-cell acute lymphocytic leukemia 1 | 1 |
| MUC2 CpG29 | mucin 2, oligomeric mucus/gel-forming | 2 |
| TBL1Y | T-box, brain, 1 | 10 |
| TBR1 | T-box 15 | 10 |
| TBX1 | T-box 18 | 33 |
| TBX18 | T-box 20 | 10 |
| TBX2 | T-box 21 | 82 |
| TBX20 | T-box 2 | 51 |
| TBX21 | T-box 3 | 20 |
| TBX3 | T-box 4 | 29 |
| TBX4 | T-box 5 | 31 |
| TBX5 | T-box 6 | 50 |
| TCF12 | transcription factor 15 (basic helix-loop-helix) | 10 |
| TCF15 | transcription factor 21 | 10 |
| TDRD10 | thyrotrophic embryonic factor | 10 |
| TCF4 | transcription factor 7-like 1 (T-cell specific, HMG-box) | 9 |
| TCF7L1 | transcription factor 7-like 2 (T-cell specific, HMG-box) | 1 |
| TFAP2C | transcription factor AP-4 (activating enhancer binding protein 4) | 30 |
| TGFBR2 | TGFB-induced factor homeobox 1 | 1 |
| ZFP30 | ZFP36 ring finger protein-like 2 | 1 |
| TLR9 | T-cell leukemia homeobox 1 | 20 |
| TLX1 | T-cell leukemia homeobox 2 | 21 |
| TLX2 | T-cell leukemia homeobox 3 | 31 |
| TRIM29 | tripartite motif containing 29 | 34 |
| TSHZ3 | teashirt zinc finger homeobox 3 | 9 |
| TWIST1 | twist basic helix-loop-helix transcription factor 1 | 144 |
| UBP1 | upstream binding protein 1 (LBP-1a) | 9 |
| UNCX | UNC homeobox | 10 |
| UNCX4.1 | UNC homeobox | 9 |
| VAX1 | ventral anterior homeobox 1 | 10 |
| VAX2 | ventral anterior homeobox 2 | 1 |
| VENTX | VENT homeobox | 10 |
| VSX1 | visual system homeobox 1 | 51 |
| VSX2 | visual system homeobox 2 | 10 |
| WNT5A | wingless-type MMTV integration site family, member 5A | 10 |
| WT1 | Wilms tumor 1 | 288 |
| ZNF518B | zinc finger protein 518B | 9 |
| ZBTB38 | zinc finger and BTB domain containing 38 | 1 |
| ZEB1 | zinc finger E-box binding homeobox 1 | 1 |
| ZEB2 | zinc finger E-box binding homeobox 2 | 10 |
| ZFHX3 | zinc finger homeobox 3 | 9 |
| ZFHX4 | zinc finger homeobox 4 | 10 |
| ZFP42 | ZFP42 zinc finger protein | 20 |
| ZIC1 | Zic family member 1 | 30 |
| ZIC3 | Zic family member 3 | 10 |
| ZIC5 | Zic family member 5 | 10 |
| ZKSCAN2 | zinc finger with KRAB and SCAN domains 2 | 9 |
| ZNF132 | zinc finger protein 132 | 20 |
| ZNF134 | zinc finger protein 134 | 20 |
| ZNF135 | zinc finger protein 135 | 21 |
| ZNF148 | zinc finger protein 148 | 9 |
| ZNF154 | zinc finger protein 154 | 51 |
| ZNF174 | zinc finger protein 174 | 1 |
| ZNF175 | zinc finger protein 175 | 9 |
| ZNF213 | zinc finger protein 213 | 1 |
| ZNF232 | zinc finger protein 232 | 11 |
| ZNF256 | zinc finger protein 256 | 20 |
| ZNF277P | zinc finger protein 277 | 9 |
| ZNF33A | zinc finger protein 33A | 1 |
| ZNF397 | zinc finger protein 397 | 10 |
| ZNF44 | zinc finger protein 449 | 30 |
| ZNF500 | zinc finger protein 500 | 1 |
| ZNF75D | zinc finger protein 75D | 1 |
| ZNF75 | zinc finger protein 75D | 19 |
| ZNF71 | zinc finger protein 71 | 1 |
| ZSCAN5 | zinc finger and SCAN domain containing 5A | 9 |
| ZSCAN1 | zinc finger and SCAN domain containing 18 | 51 |
| ZNF397OS | zinc finger and SCAN domain containing 30 | 1 |
| ZNF323 | zinc finger and SCAN domain containing 31 | 20 |
| ZSCAN18 | zinc finger and SCAN domain containing 1 | 1 |
| ZSCAN2 | zinc finger and SCAN domain containing 2 | 9 |
