Standard Physico-chemical Properties

This module allow users to compute standard physico-chemical properties from the submitted protein/peptide sequence(s). User may enter sequence(s) in either one line or in FASTA format. The user can also provide the PDB or UniProt IDs in the mentioned format. For more information see HELP page.

Paste peptide sequence(s) in single line format or FASTA format:

OR Submit sequence file:

OR PDB IDs:

OR UniProt IDs:

Select portion of Sequence:

This section allow users to select either complete or specific portion of the seqeunce, such as

Whole: Performs operation on complete sequence
N-Term: This allows to cut the user specified portion from N-terminal of the sequence
C-Term: This allows to cut the user specified portion from C-terminal of the sequence
Split: This allows users to split the sequence into fragments and performs calculation indepedently
Rest: This allows users to drop the residues from N- and C-terminal and performs calculation on the remaining fragment

Whole N-Term C-Term Split Rest: N-term C-term

Select desired Physico-chemical Properties:

This allows to select the physico-chemical properties whose composition is desired by the users.

Positively charged	Negatively charged	Neutral charged
Polarity	Non polarity	Aliphaticity
Cyclic	Aromaticity	Acidicity
Basicity	Neutral (ph)	Hydrophobicity
Hydrophilicity	Neutral	Hydroxylic
Sulphur content	Tiny	Small
Large