Standard Physico-chemical Properties

 

This module allow users to compute standard physico-chemical properties from the submitted protein/peptide sequence(s). User may enter sequence(s) in either one line or in FASTA format. The user can also provide the PDB or UniProt IDs in the mentioned format. For more information see HELP page.

Paste peptide sequence(s) in single line format or FASTA format:
OR Submit sequence file: 
OR PDB IDs:      
OR UniProt IDs: 
  • Select portion of Sequence:
    • This section allow users to select either complete or specific portion of the seqeunce, such as

      1. Whole: Performs operation on complete sequence
      2. N-Term: This allows to cut the user specified portion from N-terminal of the sequence
      3. C-Term: This allows to cut the user specified portion from C-terminal of the sequence
      4. Split: This allows users to split the sequence into fragments and performs calculation indepedently
      5. Rest: This allows users to drop the residues from N- and C-terminal and performs calculation on the remaining fragment
Whole   N-Term        C-Term       Split       Rest:    N-term   C-term  

Select desired Physico-chemical Properties: This allows to select the physico-chemical properties whose composition is desired by the users.

                                       
 Positively charged    Negatively charged    Neutral charged  
 Polarity    Non polarity    Aliphaticity  
 Cyclic    Aromaticity    Acidicity  
 Basicity    Neutral (ph)    Hydrophobicity  
 Hydrophilicity     Neutral     Hydroxylic   
 Sulphur content     Tiny     Small   
 Large