Atom & Bond Binary Profile (ATBP)

 

This module allow users to compute atom & bond binary profile (ATBP) of protein/peptide sequence(s). User may type the sequence or upload the file of sequences in single line or FASTA format. The user can also provide the PDB or UniProt IDs in the mentioned format. For more information see HELP page.

Paste peptide sequence(s) in single line format or FASTA format:
OR Submit sequence file: 
OR PDB IDs:      
OR UniProt IDs: 
  • Select method:
    • This section allow users to select the level, such as

      1. Atom: This allows user to calcualte the percentage composition of submitted sequences at atomic level
      2. Bond: This allows user to calcualte the percentage composition of submitted sequences at bond level
      3. Atom & Bond: This allows user to calcualte the percentage composition of submitted sequences at atomic and bond level
Atom             Bond              Atom & Bond             
  • Select portion of Sequence:
    • This section allow users to select either complete or specific portion of the seqeunce, such as

      1. Whole: Performs operation on complete sequence
      2. N-Term: This allows to cut the user specified portion from N-terminal of the sequence
      3. C-Term: This allows to cut the user specified portion from C-terminal of the sequence
      4. Split: This allows users to split the sequence into fragments and performs calculation indepedently
      5. Rest: This allows users to drop the residues from N- and C-terminal and performs calculation on the remaining fragment
Whole  N-Term      C-Term     Split     Rest  N-Term   C-Term