Structural Physico-chemical Properties

 

This tool has been developed to calculate Structural Physico-chemical properties of a protein or peptide sequence, where users are allowed to paste or upload file with multiple protein/peptide sequences [fasta format or single line sequnces] similar to the Example sequence. The user can also provide the PDB or UniProt IDs in the mentioned format. For more information see HELP page.

Paste peptide sequence(s) in single line format or FASTA format:
OR Submit sequence file: 
OR PDB IDs:      
OR UniProt IDs: 
  • Select portion of Sequence:
    • This section allow users to select either complete or specific portion of the seqeunce, such as

      1. Whole: Performs operation on complete sequence
      2. N-Term: This allows to cut the user specified portion from N-terminal of the sequence
      3. C-Term: This allows to cut the user specified portion from C-terminal of the sequence
      4. Rest: This allows users to drop the residues from N- and C-terminal and performs calculation on the remaining fragment
Whole    N-Term        C-Term       Split       Rest:    N-term   C-term  

Physico-chemical Properties to Be Displayed :                                        
 Secondary Structure(Helix)    Secondary Structure(Strands)    Secondary Structure(Coil)  
 Solvent Accessibilty (Buried)    Solvent Accesibilty(Exposed)    Solvent Accesibilty(Intermediate)