List of Descriptors and Abbreviations
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This page describes the headers of results obtained using composition and binary profile modules of Pfeatures. There are two columns in each table, where first column represents the obtained header of sub-module comes under each module, and second column exhibits the decription of each header. |
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Note: ‘N’ prefix is added to the header for choosing N-terminal residues, ‘C’ prefix is added to the header for choosing C-terminal residues, ‘R’ prefix is added to the header for choosing rest method, and the suffix of ‘sn’, where n is the number of splits, is added on choosing the split option. |
Amino Acid Composition (20 Features)
| Header | Description |
|---|---|
| AAC_A | Amino acid composition of Alanine |
| AAC_C | Amino acid composition of Cysteine |
| AAC_D | Amino acid composition of Aspartic acid |
| AAC_E | Amino acid composition of Glutamic acid |
| AAC_F | Amino acid composition of Phenylalanine |
| AAC_G | Amino acid composition of Glycine |
| AAC_H | Amino acid composition of Histidine |
| AAC_I | Amino acid composition of Isoleucine |
| AAC_K | Amino acid composition of Lysine |
| AAC_L | Amino acid composition of Leucine |
| AAC_M | Amino acid composition of Methionine |
| AAC_N | Amino acid composition of Asparagine |
| AAC_P | Amino acid composition of Proline |
| AAC_Q | Amino acid composition of Glutamine |
| AAC_R | Amino acid composition of Arginine |
| AAC_S | Amino acid composition of Serine |
| AAC_T | Amino acid composition of Threonine |
| AAC_V | Amino acid composition of Valine |
| AAC_W | Amino acid composition of Tryptophan |
| AAC_Y | Amino acid composition of Tyrosine |
| Note | Top |
Dipeptide Composition (Order=1, Traditional) (400 Features)
| Header | Description |
|---|---|
| DPC1_AA | Composition of Alanine-Alanine |
| DPC1_AC | Composition of Alanine-Cysteine |
| : | : |
| : | : |
| DPC1_YW | Composition of Alanine-Cysteine |
| DPC1_YY | Composition of Alanine-Cysteine |
| Note | Top |
Dipeptide Composition (Order=2, Alternate) (400 Features)
| Header | Description |
|---|---|
| DPC2_AA | Composition of Alanine-Alanine |
| DPC2_AC | Composition of Alanine-Cysteine |
| : | : |
| : | : |
| DPC2_YW | Composition of Alanine-Cysteine |
| DPC2_YY | Composition of Alanine-Cysteine |
| Note | Top |
Dipeptide Composition (Order=3, Gap of 2 residues) (400 Features)
| Header | Description |
|---|---|
| DPC3_AA | Composition of Alanine-Alanine |
| DPC3_AC | Composition of Alanine-Cysteine |
| : | : |
| : | : |
| DPC3_YW | Composition of Alanine-Cysteine |
| DPC3_YY | Composition of Alanine-Cysteine |
| Note | Top |
Tripeptide Composition (8000 Features)
| Header | Description |
|---|---|
| TPC_AAA | Composition of Alanine-Alanine-Alanine |
| TPC_AAC | Composition of Alanine-Alanine-Cysteine |
| TPC_AAD | Composition of Alanine-Alanine-Aspartic acid |
| TPC_AAE | Composition of Alanine-Alanine-Glutamic acid |
| TPC_AAF | Composition of Alanine-Alanine-Phenylalanine |
| TPC_AAG | Composition of Alanine-Alanine-Glycine |
| TPC_AAH | Composition of Alanine-Alanine-Histidine |
| TPC_AAI | Composition of Alanine-Alanine-Isoleucine |
| TPC_AAK | Composition of Alanine-Alanine-Lysine |
| TPC_AAL | Composition of Alanine-Alanine-Leucine |
| : | : |
| : | : |
| TPC_YYM | Composition of Tyrosine-Tyrosine-Methionine |
| TPC_YYN | Composition of Tyrosine-Tyrosine-Asparagine |
| TPC_YYP | Composition of Tyrosine-Tyrosine-Proline |
| TPC_YYQ | Composition of Tyrosine-Tyrosine-Glutamine |
| TPC_YYR | Composition of Tyrosine-Tyrosine-Arginine |
| TPC_YYS | Composition of Tyrosine-Tyrosine-Serine |
| TPC_YYT | Composition of Tyrosine-Tyrosine-Threonine |
| TPC_YYV | Composition of Tyrosine-Tyrosine-Valine |
| TPC_YYW | Composition of Tyrosine-Tyrosine-Tryptophan |
| TPC_YYY | Composition of Tyrosine-Tyrosine- Tyrosine |
| Top |
Atom Type Composition (5 Features)
| Header | Description |
|---|---|
| ATC_C | Atomic Composition of Carbon |
| ATC_H | Atomic Composition of Hydrogen |
| ATC_N | Atomic Composition of Nitrogen |
| ATC_O | Atomic Composition of Oxygen |
| ATC_S | Atomic Composition of Sulphur |
| Note | Top |
Btom Type Composition (4 Features)
| Header | Description |
|---|---|
| BTC_T | Composition of Total bonds |
| BTC_H | Composition of Hydrogen bonds |
| BTC_S | Composition of Single bonds |
| BTC_D | Composition of Double bonds |
| Note | Top |
Physico-Chemical Properties Composition (30 Features)
| Header | Description |
|---|---|
| PCP_PC | Composition of positively charged residues |
| PCP_NC | Composition of positively charged residues |
| PCP_NE | Composition of neutral charged residues |
| PCP_PO | Composition of polar residues |
| PCP_NP | Composition of non-polar residues |
| PCP_AL | Composition of residues having aliphatic side chain |
| PCP_CY | Composition of residues having cyclic side chain |
| PCP_AR | Composition of aromatic residues |
| PCP_AC | Composition of acidic residues |
| PCP_BS | Composition of basic residues |
| PCP_NE_ph | Composition of neutral residues based on pH |
| PCP_HB | Composition of hydrophobic residues |
| PCP_HL | Composition of hydrophilic residues |
| PCP_NT | Composition of neutral residues |
| PCP_HX | Composition of hydroxylic residues |
| PCP_SC | Composition of residues having sulphur content |
| PCP_SS_HE | Composition of residue in secondary structure (Helix) |
| PCP_SS_ST | Composition of residue in secondary structure (Strands) |
| PCP_SS_CO | Composition of residue in secondary structure (Coil) |
| PCP_SA_BU | Composition of residue in solvent accessibility (Buried) |
| PCP_SA_EX | Composition of residue in solvent accessibility (Exposed) |
| PCP_SA_IN | Composition of residue in solvent accessibility (Intermediate) |
| PCP_TN | Composition of tiny residues |
| PCP_SM | Composition of small residues |
| PCP_LR | Composition of large residues |
| PCP_Z1 | Composition of residues having Z1 advanced Physico-chemical properties |
| PCP_Z2 | Composition of residues having Z2 advanced Physico-chemical properties |
| PCP_Z3 | Composition of residues having Z3 advanced Physico-chemical properties |
| PCP_Z4 | Composition of residues having Z4 advanced Physico-chemical properties |
| PCP_Z5 | Composition of residues having Z5 advanced Physico-chemical properties |
| Note | Top |
Composition Based on Amino Acid Index (553 Features)
| Header | Description |
|---|---|
| AAI_ANDN920101 | Composition of index ANDN920101 |
| AAI_ARGP820101 | Composition of index ARGP820101 |
| AAI_ARGP820102 | Composition of index ARGP820102 |
| AAI_ARGP820103 | Composition of index ARGP820103 |
| AAI_BEGF750101 | Composition of index BEGF750101 |
| AAI_BEGF750102 | Composition of index BEGF750102 |
| AAI_BEGF750103 | Composition of index BEGF750103 |
| AAI_BHAR880101 | Composition of index BHAR880101 |
| AAI_BIGC670101 | Composition of index BIGC670101 |
| AAI_BIOV880101 | Composition of index BIOV880101 |
| : | : |
| : | : |
| AAI_KARS160113 | Composition of index KARS160113 |
| AAI_KARS160114 | Composition of index KARS160114 |
| AAI_KARS160115 | Composition of index KARS160115 |
| AAI_KARS160116 | Composition of index KARS160116 |
| AAI_KARS160117 | Composition of index KARS160117 |
| AAI_KARS160118 | Composition of index KARS160118 |
| AAI_KARS160119 | Composition of index KARS160119 |
| AAI_KARS160120 | Composition of index KARS160120 |
| AAI_KARS160121 | Composition of index KARS160121 |
| AAI_KARS160122 | Composition of index KARS160122 |
| Note | Top |
Residue Repeat Information (20 Features)
| Header | Description |
|---|---|
| RRI_A | Residue repeat information of Alanine |
| RRI_C | Residue repeat information of Cysteine |
| RRI_D | Residue repeat information of Aspartic acid |
| RRI_E | Residue repeat information of Glutamic acid |
| RRI_F | Residue repeat information of Phenylalanine |
| RRI_G | Residue repeat information of Glycine |
| RRI_H | Residue repeat information of Histidine |
| RRI_I | Residue repeat information of Isoleucine |
| RRI_K | Residue repeat information of Lysine |
| RRI_L | Residue repeat information of Leucine |
| RRI_M | Residue repeat information of Methionine |
| RRI_N | Residue repeat information of Asparagine |
| RRI_P | Residue repeat information of Proline |
| RRI_Q | Residue repeat information of Glutamine |
| RRI_R | Residue repeat information of Arginine |
| RRI_S | Residue repeat information of Serine |
| RRI_T | Residue repeat information of Threonine |
| RRI_V | Residue repeat information of Valine |
| RRI_W | Residue repeat information of Tryptophan |
| RRI_Y | Residue repeat information of Tyrosine |
| Note | Top |
Physico-Chemical Property Repeat Information (25 Features)
| Header | Description |
|---|---|
| PRI_PC | Residue repeat information for positive charged residues |
| PRI_PC | Residue repeat information for negative charged residues |
| PRI_NE | Residue repeat information for neutral charged residues |
| PRI_PO | Residue repeat information for polar residues |
| PRI_NP | Residue repeat information for non-polar residues |
| PRI_AL | Residue repeat information for residues having aliphatic side chain |
| PRI_CY | Residue repeat information for residues having cyclic side chain |
| PRI_AR | Residue repeat information for aromatic residues |
| PRI_AC | Residue repeat information for acidic residues |
| PRI_BS | Residue repeat information for basic residues |
| PRI_NE | Residue repeat information for neutral residues based on pH |
| PRI_HB | Residue repeat information for hydrophobic residues |
| PRI_HL | Residue repeat information for hydrophilic residues |
| PRI_NT | Residue repeat information for neutral residues |
| PRI_HX | Residue repeat information for hydroxylic residues |
| PRI_SC | Residue repeat information for residues having sulphur content |
| PRI_SS_HE | Residue repeat information for residues in secondary structure (Helix) |
| PRI_SS_ST | Residue repeat information for residues in secondary structure (Strands) |
| PRI_SS_CO | Residue repeat information for residues in secondary structure (Coil) |
| PRI_SA_BU | Residue repeat information for residues in solvent accessibility (Buried) |
| PRI_SA_EX | Residue repeat information for residues in solvent accessibility (Exposed) |
| PRI_SA_IN | Residue repeat information for residues in solvent accessibility (Intermediate) |
| PRI_TN | Residue repeat information for tiny residues |
| PRI_SM | Residue repeat information for small residues |
| PRI_LR | Residue repeat information for large residues |
| Top |
Distance Distribution of Repeats (20 Features)
| Header | Description |
|---|---|
| DDR_A | Distribution of Alanine |
| DDR_C | Distribution of Cysteine |
| DDR_D | Distribution of Aspartic acid |
| DDR_E | Distribution of Glutamic acid |
| DDR_F | Distribution of Phenylalanine |
| DDR_G | Distribution of Glycine |
| DDR_H | Distribution of Histidine |
| DDR_I | Distribution of Isoleucine |
| DDR_K | Distribution of Lysine |
| DDR_L | Distribution of Leucine |
| DDR_M | Distribution of Methionine |
| DDR_N | Distribution of Asparagine |
| DDR_P | Distribution of Proline |
| DDR_Q | Distribution of Glutamine |
| DDR_R | Distribution of Arginine |
| DDR_S | Distribution of Serine |
| DDR_T | Distribution of Threonine |
| DDR_V | Distribution of Valine |
| DDR_W | Distribution of Tryptophan |
| DDR_Y | Distribution of Tyrosine |
| Top |
Whole Protiein Wise Shannan Entropy (1 Feature)
| Header | Description |
|---|---|
| SEP | Shannon entropy of whole protein |
| Note | Top |
Residue Wise Shannan Entropy (20 Features)
| Header | Description |
|---|---|
| SER_A | Shannon entropy of Alanine |
| SER_C | Shannon entropy of Cysteine |
| SER_D | Shannon entropy of Aspartic acid |
| SER_E | Shannon entropy of Glutamic acid |
| SER_F | Shannon entropy of Phenylalanine |
| SER_G | Shannon entropy of Glycine |
| SER_H | Shannon entropy of Histidine |
| SER_I | Shannon entropy of Isoleucine |
| SER_K | Shannon entropy of Lysine |
| SER_L | Shannon entropy of Leucine |
| SER_M | Shannon entropy of Methionine |
| SER_N | Shannon entropy of Asparagine |
| SER_P | Shannon entropy of Proline |
| SER_Q | Shannon entropy of Glutamine |
| SER_R | Shannon entropy of Arginine |
| SER_S | Shannon entropy of Serine |
| SER_T | Shannon entropy of Threonine |
| SER_V | Shannon entropy of Valine |
| SER_W | Shannon entropy of Tryptophan |
| SER_Y | Shannon entropy of Tyrosine |
| Note | Top |
Physico-Chemical Properties Wise Shannan Entropy (25 Features)
| Header | Description |
|---|---|
| SEP_PC | Shannon entropy of positive charged residues |
| SEP_PC | Shannon entropy of negative charged residues |
| SEP_NE | Shannon entropy of neutral charged residues |
| SEP_PO | Shannon entropy of polar residues |
| SEP_NP | Shannon entropy of non-polar residues |
| SEP_AL | Shannon entropy of residues having aliphatic side chain |
| SEP_CY | Shannon entropy of residues having cyclic side chain |
| SEP_AR | Shannon entropy of aromatic residues |
| SEP_AC | Shannon entropy of acidic residues |
| SEP_BS | Shannon entropy of basic residues |
| SEP_NE | Shannon entropy of neutral residues based on pH |
| SEP_HB | Shannon entropy of hydrophobic residues |
| SEP_HL | Shannon entropy of hydrophilic residues |
| SEP_NT | Shannon entropy of neutral residues |
| SEP_HX | Shannon entropy of hydroxylic residues |
| SEP_SC | Shannon entropy of residues having sulphur content |
| SEP_SS_HE | Shannon entropy of residue in secondary structure (Helix) |
| SEP _SS_ST | Shannon entropy of residue in secondary structure (Strands) |
| SEP _SS_CO | Shannon entropy of residue in secondary structure (Coil) |
| SEP _SA_BU | Shannon entropy of residue in solvent accessibility (Buried) |
| SEP _SA_EX | Shannon entropy of residue in solvent accessibility (Exposed) |
| SEP _SA_IN | Shannon entropy of residue in solvent accessibility (Intermediate) |
| SEP_TN | Shannon entropy of tiny residues |
| SEP_SM | Shannon entropy of small residues |
| SEP_LR | Shannon entropy of large residues |
| Note | Top |
Autocorrelation (3 Features)
| Header | Description |
|---|---|
| ACR1_MB | Normalized Moreau-Broto autocorrelation descriptor with lag 1 |
| ACR1_MO | Morgan autocorrelation descriptor with lag 1 |
| ACR1_GE | Geary autocorrelation descriptor with lag 1 |
| Note | Top |
Conjoint Triad Descriptors (343 Features)
• Distribution of amino acids in 7 groups| Groups | Amino Acids |
|---|---|
| Group 1 | A, G, V |
| Group 2 | I, L, F, P |
| Group 3 | Y, M, T, S |
| Group 4 | H, N, Q, W |
| Group 5 | R, K |
| Group 6 | D, E |
| Group 7 | C |
| Note | Top |
| Header | Description |
|---|---|
| CTC_111 | Normalize frequency of group1-group1-group1 (tri-group) |
| CTC_112 | Normalize frequency of group1-group1-group2 (tri-group) |
| CTC_113 | Normalize frequency of group1-group1-group3 (tri-group) |
| : | : |
| CTC_775 | Normalize frequency of group7-group7-group5 (tri-group) |
| CTC_776 | Normalize frequency of group7-group7-group6 (tri-group) |
| CCT_777 | Normalize frequency of group7-group7-group7 (tri-group) |
| Note | Top |
Composition enhanced Transition and Distribution (189 Features)
• Distribution of amino acids in 3 groups based on 7 attributes| Attributes | Group 1 | Group 2 | Group 3 |
|---|---|---|---|
| Hydrophobicity | R,K,E,D,Q,N | G,A,S,T,P,H,Y | C,L,V,I,M,F,W |
| Normalized Vander Waals Volume | G,A,S,T,P,D | N,V,E,Q,I,L | M,H,K,F,R,Y,W |
| Polarity | L,I,F,W,C,M,V,Y | P,A,T,G,S | H,Q,R,K,N,E,D |
| Polarizability | G,A,S,D,T | C,P,N,V,E,Q,I,L | K,M,H,F,R,Y,W |
| Charge | K,R | A,N,C,Q,G,H,I,L,M,F,P,S,T,W,Y,V | D,E |
| Secondary Structure | E,A,L,M,Q,K,R,H | V,I,Y,C,W,F,T | G,N,P,S,D |
| Solvent Accessibility | A,L,F,C,G,I,V,W | R,K,Q,E,N,D | M,S P,T,H,Y |
| Note | Top |
• Composition (21 Features)
| Header | Description |
|---|---|
| CeTD_HB1 | Composition of group 1 residues for hydrophobicity attribute |
| CeTD_HB2 | Composition of group 2 residues for hydrophobicity attribute |
| CeTD_HB3 | Composition of group 3 residues for hydrophobicity attribute |
| CeTD_VW1 | Composition of group 1 residues for normalized vander waals volume attribute |
| CeTD_VW2 | Composition of group 2 residues for normalized vander waals volume attribute |
| CeTD_VW3 | Composition of group 3 residues for normalized vander waals volume attribute |
| CeTD_PO1 | Composition of group 1 residues for polarity attribute |
| CeTD_PO2 | Composition of group 2 residues for polarity attribute |
| CeTD_PO3 | Composition of group 3 residues for polarity attribute |
| CeTD_PZ1 | Composition of group 1 residues for polarizability attribute |
| CeTD_PZ2 | Composition of group 2 residues for polarizability attribute |
| CeTD_PZ3 | Composition of group 3 residues for polarizability attribute |
| CeTD_CH1 | Composition of group 1 residues for charge attribute |
| CeTD_CH2 | Composition of group 2 residues for charge attribute |
| CeTD_CH3 | Composition of group 3 residues for charge attribute |
| CeTD_SS1 | Composition of group 1 residues for secondary structure attribute |
| CeTD_SS2 | Composition of group 2 residues for secondary structure attribute |
| CeTD_SS3 | Composition of group 3 residues for secondary structure attribute |
| CeTD_SA1 | Composition of group 1 residues for solvent accessibility attribute |
| CeTD_SA2 | Composition of group 2 residues for solvent accessibility attribute |
| CeTD_SA3 | Composition of group 3 residues for solvent accessibility attribute |
| Note | Top |
• Transition (63 Features)
| Header | Description |
|---|---|
| CeTD_11_HB | Number of transitions takes place from group 1 residues to group 1 residues for hydrophobicity attribute |
| CeTD_11_VW | Number of transitions takes place from group 1 residues to group 1 residues for normalized vander waals volume attribute |
| CeTD_11_PO | Number of transitions takes place from group 1 residues to group 1 residues for polarity attribute |
| : | : |
| : | : |
| CeTD_12_HB | Number of transitions takes place from group 1 residues to group 2 residues for hydrophobicity attribute |
| CeTD_12_VW | Number of transitions takes place from group 1 residues to group 2 residues for normalized vander waals volume attribute |
| CeTD_12_PO | Number of transitions takes place from group 1 residues to group 2 residues for polarity attribute |
| : | : |
| : | : |
| CeTD_33_CH | Number of transitions takes place from group 3 residues to group 3 residues for charge attribute |
| CeTD_33_SS | Number of transitions takes place from group 3 residues to group 3 residues for secondary structure attribute |
| CeTD_33_SA | Number of transitions takes place from group 3 residues to group 3 residues for solvent accessibility attribute |
| Note | Top |
• Distribution (105 Features)
| Header | Description |
|---|---|
| CeTD_0_p_HB1 | Number of group 1 residues for hydrophobicity present in 0% quartile |
| CeTD_25_p_HB1 | Number of group 1 residues for hydrophobicity present in 25% quartile |
| CeTD_50_p_HB1 | Number of group 1 residues for hydrophobicity present in 50% quartile |
| CeTD_75_p_HB1 | Number of group 1 residues for hydrophobicity present in 75% quartile |
| CeTD_100_p_HB1 | Number of group 1 residues for hydrophobicity present in 100% quartile |
| CeTD_0_p_VW1 | Number of group 1 residues for normalized vander waals volume present in 0% quartile |
| CeTD_25_p_VW1 | Number of group 1 residues for normalized vander waals volume present in 25% quartile |
| CeTD_50_p_VW1 | Number of group 1 residues for normalized vander waals volume present in 50% quartile |
| CeTD_75_p_VW1 | Number of group 1 residues for normalized vander waals volume present in 75% quartile |
| CeTD_100_p_VW1 | Number of group 1 residues for normalized vander waals volume present in 100% quartile |
| : | : |
| : | : |
| CeTD_0_p_HB2 | Number of group 2 residues for hydrophobicity present in 0% quartile |
| CeTD_25_p_HB2 | Number of group 2 residues for hydrophobicity present in 25% quartile |
| CeTD_50_p_HB2 | Number of group 2 residues for hydrophobicity present in 50% quartile |
| CeTD_75_p_HB2 | Number of group 2 residues for hydrophobicity present in 75% quartile |
| CeTD_100_p_HB2 | Number of group 2 residues for hydrophobicity present in 100% quartile |
| CeTD_0_p_VW2 | Number of group 2 residues for normalized vander waals volume present in 0% quartile |
| CeTD_25_p_VW2 | Number of group 2 residues for normalized vander waals volume present in 25% quartile |
| CeTD_50_p_VW2 | Number of group 2 residues for normalized vander waals volume present in 50% quartile |
| CeTD_75_p_VW2 | Number of group 2 residues for normalized vander waals volume present in 75% quartile |
| CeTD_100_p_VW2 | Number of group 2 residues for normalized vander waals volume present in 100% quartile |
| : | : |
| : | : |
| CeTD_0_p_SA3 | Number of group 2 residues for solvent accessibility present in 0% quartile |
| CeTD_25_p_ SA3 | Number of group 2 residues for solvent accessibility present in 25% quartile |
| CeTD_50_p_ SA3 | Number of group 2 residues for solvent accessibility present in 50% quartile |
| CeTD_75_p_ SA3 | Number of group 2 residues for solvent accessibility present in 75% quartile |
| CeTD_100_p_ SA3 | Number of group 2 residues for solvent accessibility present in 100% quartile |
| Note | Top |
Pseudo Amino Acid Composition (Order 1, Traditional) (21 Features)
| Header | Description |
|---|---|
| PAAC1_A | Pseudo amino acid composition of Alanine |
| PAAC1_C | Pseudo amino acid composition of Cysteine |
| PAAC1_D | Pseudo amino acid composition of Aspartic acid |
| PAAC1_E | Pseudo amino acid composition of Glutamic acid |
| PAAC1_F | Pseudo amino acid composition of Phenylalanine |
| PAAC1_G | Pseudo amino acid composition of Glycine |
| PAAC1_H | Pseudo amino acid composition of Histidine |
| PAAC1_I | Pseudo amino acid composition of Isoleucine |
| PAAC1_K | Pseudo amino acid composition of Lysine |
| PAAC1_L | Pseudo amino acid composition of Leucine |
| PAAC1_M | Pseudo amino acid composition of Methionine |
| PAAC1_N | Pseudo amino acid composition of Asparagine |
| PAAC1_P | Pseudo amino acid composition of Proline |
| PAAC1_Q | Pseudo amino acid composition of Glutamine |
| PAAC1_R | Pseudo amino acid composition of Arginine |
| PAAC1_S | Pseudo amino acid composition of Serine |
| PAAC1_T | Pseudo amino acid composition of Threonine |
| PAAC1_V | Pseudo amino acid composition of Valine |
| PAAC1_W | Pseudo amino acid composition of Tryptophan |
| PAAC1_Y | Pseudo amino acid composition of Tyrosine |
| PAAC1_lam1 | Sequence correlation factor for lambda 1 |
| Note | Top |
Pseudo Amino Acid Composition (Order 2, Alternate) (22 Features)
| Header | Description |
|---|---|
| PAAC2_A | Pseudo amino acid composition of Alanine |
| PAAC2_C | Pseudo amino acid composition of Cysteine |
| PAAC2_D | Pseudo amino acid composition of Aspartic acid |
| PAAC2_E | Pseudo amino acid composition of Glutamic acid |
| PAAC2_F | Pseudo amino acid composition of Phenylalanine |
| PAAC2_G | Pseudo amino acid composition of Glycine |
| PAAC2_H | Pseudo amino acid composition of Histidine |
| PAAC2_I | Pseudo amino acid composition of Isoleucine |
| PAAC2_K | Pseudo amino acid composition of Lysine |
| PAAC2_L | Pseudo amino acid composition of Leucine |
| PAAC2_M | Pseudo amino acid composition of Methionine |
| PAAC2_N | Pseudo amino acid composition of Asparagine |
| PAAC2_P | Pseudo amino acid composition of Proline |
| PAAC2_Q | Pseudo amino acid composition of Glutamine |
| PAAC2_R | Pseudo amino acid composition of Arginine |
| PAAC2_S | Pseudo amino acid composition of Serine |
| PAAC2_T | Pseudo amino acid composition of Threonine |
| PAAC2_V | Pseudo amino acid composition of Valine |
| PAAC2_W | Pseudo amino acid composition of Tryptophan |
| PAAC2_Y | Pseudo amino acid composition of Tyrosine |
| PAAC2_lam1 | Sequence correlation factor for lambda 1 |
| PAAC2_lam2 | Sequence correlation factor for lambda 2 |
| Note | Top |
Pseudo Amino Acid Composition (Order 3, Gap of 2 residues) (23 Features)
| Header | Description |
|---|---|
| PAAC3_A | Pseudo amino acid composition of Alanine |
| PAAC3_C | Pseudo amino acid composition of Cysteine |
| PAAC3_D | Pseudo amino acid composition of Aspartic acid |
| PAAC3_E | Pseudo amino acid composition of Glutamic acid |
| PAAC3_F | Pseudo amino acid composition of Phenylalanine |
| PAAC3_G | Pseudo amino acid composition of Glycine |
| PAAC3_H | Pseudo amino acid composition of Histidine |
| PAAC3_I | Pseudo amino acid composition of Isoleucine |
| PAAC3_K | Pseudo amino acid composition of Lysine |
| PAAC3_L | Pseudo amino acid composition of Leucine |
| PAAC3_M | Pseudo amino acid composition of Methionine |
| PAAC3_N | Pseudo amino acid composition of Asparagine |
| PAAC3_P | Pseudo amino acid composition of Proline |
| PAAC3_Q | Pseudo amino acid composition of Glutamine |
| PAAC3_R | Pseudo amino acid composition of Arginine |
| PAAC3_S | Pseudo amino acid composition of Serine |
| PAAC3_T | Pseudo amino acid composition of Threonine |
| PAAC3_V | Pseudo amino acid composition of Valine |
| PAAC3_W | Pseudo amino acid composition of Tryptophan |
| PAAC3_Y | Pseudo amino acid composition of Tyrosine |
| PAAC3_lam1 | Sequence correlation factor for lambda 1 |
| PAAC3_lam2 | Sequence correlation factor for lambda 2 |
| PAAC3_lam3 | Sequence correlation factor for lambda 3 |
| Note | Top |
Amphiphilic Pseudo Amino Acid Composition (Order 1, Traditional) (23 Features)
| Header | Description |
|---|---|
| APAAC1_A | Amphiphilic pseudo amino acid composition of Alanine |
| APAAC1_C | Amphiphilic pseudo amino acid composition of Cysteine |
| APAAC1_D | Amphiphilic pseudo amino acid composition of Aspartic acid |
| APAAC1_E | Amphiphilic pseudo amino acid composition of Glutamic acid |
| APAAC1_F | Amphiphilic pseudo amino acid composition of Phenylalanine |
| APAAC1_G | Amphiphilic pseudo amino acid composition of Glycine |
| APAAC1_H | Amphiphilic pseudo amino acid composition of Histidine |
| APAAC1_I | Amphiphilic pseudo amino acid composition of Isoleucine |
| APAAC1_K | Amphiphilic pseudo amino acid composition of Lysine |
| APAAC1_L | Amphiphilic pseudo amino acid composition of Leucine |
| APAAC1_M | Amphiphilic pseudo amino acid composition of Methionine |
| APAAC1_N | Amphiphilic pseudo amino acid composition of Asparagine |
| APAAC1_P | Amphiphilic pseudo amino acid composition of Proline |
| APAAC1_Q | Amphiphilic pseudo amino acid composition of Glutamine |
| APAAC1_R | Amphiphilic pseudo amino acid composition of Arginine |
| APAAC1_S | Amphiphilic pseudo amino acid composition of Serine |
| APAAC1_T | Amphiphilic pseudo amino acid composition of Threonine |
| APAAC1_V | Amphiphilic pseudo amino acid composition of Valine |
| APAAC1_W | Amphiphilic pseudo amino acid composition of Tryptophan |
| APAAC1_Y | Amphiphilic pseudo amino acid composition of Tyrosine |
| APAAC1_HB_lam1 | Sequence correlation factor for hydrophobicity with lambda 1 |
| APAAC1_HL_lam1 | Sequence correlation factor for hydrophilicity with lambda 1 |
| APAAC1_SC_lam1 | Sequence correlation factor for side chain mass with lambda 1 |
| Note | Top |
Amphiphilic Pseudo Amino Acid Composition (Order 2, Alternate) (26 Features)
| Header | Description |
|---|---|
| APAAC1_A | Amphiphilic pseudo amino acid composition of Alanine |
| APAAC1_C | Amphiphilic pseudo amino acid composition of Cysteine |
| APAAC1_D | Amphiphilic pseudo amino acid composition of Aspartic acid |
| APAAC1_E | Amphiphilic pseudo amino acid composition of Glutamic acid |
| APAAC1_F | Amphiphilic pseudo amino acid composition of Phenylalanine |
| APAAC1_G | Amphiphilic pseudo amino acid composition of Glycine |
| APAAC1_H | Amphiphilic pseudo amino acid composition of Histidine |
| APAAC1_I | Amphiphilic pseudo amino acid composition of Isoleucine |
| APAAC1_K | Amphiphilic pseudo amino acid composition of Lysine |
| APAAC1_L | Amphiphilic pseudo amino acid composition of Leucine |
| APAAC1_M | Amphiphilic pseudo amino acid composition of Methionine |
| APAAC1_N | Amphiphilic pseudo amino acid composition of Asparagine |
| APAAC1_P | Amphiphilic pseudo amino acid composition of Proline |
| APAAC1_Q | Amphiphilic pseudo amino acid composition of Glutamine |
| APAAC1_R | Amphiphilic pseudo amino acid composition of Arginine |
| APAAC1_S | Amphiphilic pseudo amino acid composition of Serine |
| APAAC1_T | Amphiphilic pseudo amino acid composition of Threonine |
| APAAC1_V | Amphiphilic pseudo amino acid composition of Valine |
| APAAC1_W | Amphiphilic pseudo amino acid composition of Tryptophan |
| APAAC1_Y | Amphiphilic pseudo amino acid composition of Tyrosine |
| APAAC1_HB_lam1 | Sequence correlation factor for hydrophobicity with lambda 1 |
| APAAC1_HL_lam1 | Sequence correlation factor for hydrophilicity with lambda 1 |
| APAAC1_SC_lam1 | Sequence correlation factor for side chain mass with lambda 1 |
| APAAC2_HB_lam2 | Sequence correlation factor for hydrophobicity with lambda 2 |
| APAAC2_HL_lam2 | Sequence correlation factor for hydrophilicity with lambda 2 |
| APAAC2_SC_lam2 | Sequence correlation factor for side chain mass with lambda 2 |
| Note | Top |
Amphiphilic Pseudo Amino Acid Composition (Order 3, Gap of 2 residues) (29 Features)
| Header | Description |
|---|---|
| APAAC3_A | Amphiphilic pseudo amino acid composition of Alanine |
| APAAC3_C | Amphiphilic pseudo amino acid composition of Cysteine |
| APAAC3_D | Amphiphilic pseudo amino acid composition of Aspartic acid |
| APAAC3_E | Amphiphilic pseudo amino acid composition of Glutamic acid |
| APAAC3_F | Amphiphilic pseudo amino acid composition of Phenylalanine |
| APAAC3_G | Amphiphilic pseudo amino acid composition of Glycine |
| APAAC3_H | Amphiphilic pseudo amino acid composition of Histidine |
| APAAC3_I | Amphiphilic pseudo amino acid composition of Isoleucine |
| APAAC3_K | Amphiphilic pseudo amino acid composition of Lysine |
| APAAC3_L | Amphiphilic pseudo amino acid composition of Leucine |
| APAAC3_M | Amphiphilic pseudo amino acid composition of Methionine |
| APAAC3_N | Amphiphilic pseudo amino acid composition of Asparagine |
| APAAC3_P | Amphiphilic pseudo amino acid composition of Proline |
| APAAC3_Q | Amphiphilic pseudo amino acid composition of Glutamine |
| APAAC3_R | Amphiphilic pseudo amino acid composition of Arginine |
| APAAC3_S | Amphiphilic pseudo amino acid composition of Serine |
| APAAC3_T | Amphiphilic pseudo amino acid composition of Threonine |
| APAAC3_V | Amphiphilic pseudo amino acid composition of Valine |
| APAAC3_W | Amphiphilic pseudo amino acid composition of Tryptophan |
| APAAC3_Y | Amphiphilic pseudo amino acid composition of Tyrosine |
| APAAC3_HB_lam1 | Sequence correlation factor for hydrophobicity with lambda 1 |
| APAAC3_HL_lam1 | Sequence correlation factor for hydrophilicity with lambda 1 |
| APAAC3_SC_lam1 | Sequence correlation factor for side chain mass with lambda 1 |
| APAAC3_HB_lam2 | Sequence correlation factor for hydrophobicity with lambda 2 |
| APAAC3_HL_lam2 | Sequence correlation factor for hydrophilicity with lambda 2 |
| APAAC3_SC_lam2 | Sequence correlation factor for side chain mass with lambda 2 |
| APAAC3_HB_lam3 | Sequence correlation factor for hydrophobicity with lambda 3 |
| APAAC3_HL_lam3 | Sequence correlation factor for hydrophilicity with lambda 3 |
| APAAC3_SC_lam3 | Sequence correlation factor for side chain mass with lambda 3 |
| Note | Top |
Quasi-Sequence Order (Order 1, Traditional) (42 Features)
| Header | Description |
|---|---|
| QSO1_SC_A | Quasi-sequence order with Schneider matrix for Alanine |
| QSO1_SC_C | Quasi-sequence order with Schneider matrix for Cysteine |
| QSO1_SC_D | Quasi-sequence order with Schneider matrix for Aspartic acid |
| QSO1_SC_E | Quasi-sequence order with Schneider matrix for Glutamic acid |
| QSO1_SC_F | Quasi-sequence order with Schneider matrix for Phenylalanine |
| QSO1_SC_G | Quasi-sequence order with Schneider matrix for Glycine |
| QSO1_SC_H | Quasi-sequence order with Schneider matrix for Histidine |
| QSO1_SC_I | Quasi-sequence order with Schneider matrix for Isoleucine |
| QSO1_SC_K | Quasi-sequence order with Schneider matrix for Lysine |
| QSO1_SC_L | Quasi-sequence order with Schneider matrix for Leucine |
| QSO1_SC_M | Quasi-sequence order with Schneider matrix for Methionine |
| QSO1_SC_N | Quasi-sequence order with Schneider matrix for Asparagine |
| QSO1_SC_P | Quasi-sequence order with Schneider matrix for Proline |
| QSO1_SC_Q | Quasi-sequence order with Schneider matrix for Glutamine |
| QSO1_SC_R | Quasi-sequence order with Schneider matrix for Arginine |
| QSO1_SC_S | Quasi-sequence order with Schneider matrix for Serine |
| QSO1_SC_T | Quasi-sequence order with Schneider matrix for Threonine |
| QSO1_SC_V | Quasi-sequence order with Schneider matrix for Valine |
| QSO1_SC_W | Quasi-sequence order with Schneider matrix for Tryptophan |
| QSO1_SC_Y | Quasi-sequence order with Schneider matrix for Tyrosine |
| QSO1_G_A | Quasi-sequence order with Grantham matrix for Alanine |
| QSO1_G_C | Quasi-sequence order with Grantham matrix for Cysteine |
| QSO1_G_D | Quasi-sequence order with Grantham matrix for Aspartic acid |
| QSO1_G_E | Quasi-sequence order with Grantham matrix for Glutamic acid |
| QSO1_G_F | Quasi-sequence order with Grantham matrix for Phenylalanine |
| QSO1_G_G | Quasi-sequence order with Grantham matrix for Glycine |
| QSO1_G_H | Quasi-sequence order with Grantham matrix for Histidine |
| QSO1_G_I | Quasi-sequence order with Grantham matrix for Isoleucine |
| QSO1_G_K | Quasi-sequence order with Grantham matrix for Lysine |
| QSO1_G_L | Quasi-sequence order with Grantham matrix for Leucine |
| QSO1_G_M | Quasi-sequence order with Grantham matrix for Methionine |
| QSO1_G_N | Quasi-sequence order with Grantham matrix for Asparagine |
| QSO1_G_P | Quasi-sequence order with Grantham matrix for Proline |
| QSO1_G_Q | Quasi-sequence order with Grantham matrix for Glutamine |
| QSO1_G_R | Quasi-sequence order with Grantham matrix for Arginine |
| QSO1_G_S | Quasi-sequence order with Grantham matrix for Serine |
| QSO1_G_T | Quasi-sequence order with Grantham matrix for Threonine |
| QSO1_G_V | Quasi-sequence order with Grantham matrix for Valine |
| QSO1_G_W | Quasi-sequence order with Grantham matrix for Tryptophan |
| QSO1_G_Y | Quasi-sequence order with Grantham matrix for Tyrosine |
| QSO1_SC1 | Quasi-sequence order with Schneider matrix with lag 1 |
| QSO1_G1 | Quasi-sequence order with Grantham matrix with lag 1 |
| Note | Top |
Quasi-Sequence Order (Order 2, Alternate) (44 Features)
| Header | Description |
|---|---|
| QSO2_SCA | Quasi-sequence order with Schneider matrix for Alanine |
| QSO2_SCC | Quasi-sequence order with Schneider matrix for Cysteine |
| QSO2_SCD | Quasi-sequence order with Schneider matrix for Aspartic acid |
| QSO2_SCE | Quasi-sequence order with Schneider matrix for Glutamic acid |
| QSO2_SCF | Quasi-sequence order with Schneider matrix for Phenylalanine |
| QSO2_SCG | Quasi-sequence order with Schneider matrix for Glycine |
| QSO2_SCH | Quasi-sequence order with Schneider matrix for Histidine |
| QSO2_SCI | Quasi-sequence order with Schneider matrix for Isoleucine |
| QSO2_SCK | Quasi-sequence order with Schneider matrix for Lysine |
| QSO2_SCL | Quasi-sequence order with Schneider matrix for Leucine |
| QSO2_SCM | Quasi-sequence order with Schneider matrix for Methionine |
| QSO2_SCN | Quasi-sequence order with Schneider matrix for Asparagine |
| QSO2_SCP | Quasi-sequence order with Schneider matrix for Proline |
| QSO2_SCQ | Quasi-sequence order with Schneider matrix for Glutamine |
| QSO2_SCR | Quasi-sequence order with Schneider matrix for Arginine |
| QSO2_SCS | Quasi-sequence order with Schneider matrix for Serine |
| QSO2_SCT | Quasi-sequence order with Schneider matrix for Threonine |
| QSO2_SCV | Quasi-sequence order with Schneider matrix for Valine |
| QSO2_SCW | Quasi-sequence order with Schneider matrix for Tryptophan |
| QSO2_SCY | Quasi-sequence order with Schneider matrix for Tyrosine |
| QSO2_GA | Quasi-sequence order with Grantham matrix for Alanine |
| QSO2_GC | Quasi-sequence order with Grantham matrix for Cysteine |
| QSO2_GD | Quasi-sequence order with Grantham matrix for Aspartic acid |
| QSO2_GE | Quasi-sequence order with Grantham matrix for Glutamic acid |
| QSO2_GF | Quasi-sequence order with Grantham matrix for Phenylalanine |
| QSO2_GG | Quasi-sequence order with Grantham matrix for Glycine |
| QSO2_GH | Quasi-sequence order with Grantham matrix for Histidine |
| QSO2_GI | Quasi-sequence order with Grantham matrix for Isoleucine |
| QSO2_GK | Quasi-sequence order with Grantham matrix for Lysine |
| QSO2_GL | Quasi-sequence order with Grantham matrix for Leucine |
| QSO2_GM | Quasi-sequence order with Grantham matrix for Methionine |
| QSO2_GN | Quasi-sequence order with Grantham matrix for Asparagine |
| QSO2_GP | Quasi-sequence order with Grantham matrix for Proline |
| QSO2_GQ | Quasi-sequence order with Grantham matrix for Glutamine |
| QSO2_GR | Quasi-sequence order with Grantham matrix for Arginine |
| QSO2_GS | Quasi-sequence order with Grantham matrix for Serine |
| QSO2_GT | Quasi-sequence order with Grantham matrix for Threonine |
| QSO2_GV | Quasi-sequence order with Grantham matrix for Valine |
| QSO2_GW | Quasi-sequence order with Grantham matrix for Tryptophan |
| QSO2_GY | Quasi-sequence order with Grantham matrix for Tyrosine |
| QSO2_SC1 | Quasi-sequence order with Schneider matrix with lag 1 |
| QSO2_G1 | Quasi-sequence order with Grantham matrix with lag 1 |
| QSO2_SC2 | Quasi-sequence order with Schneider matrix with lag 2 |
| QSO2_G2 | Quasi-sequence order with Grantham matrix with lag 2 |
| Note | Top |
Quasi-Sequence Order (Order 3, Gap of 2 residues) (46 Features)
| Header | Description |
|---|---|
| QSO3_SCA | Quasi-sequence order with Schneider matrix for Alanine |
| QSO3_SCC | Quasi-sequence order with Schneider matrix for Cysteine |
| QSO3_SCD | Quasi-sequence order with Schneider matrix for Aspartic acid |
| QSO3_SCE | Quasi-sequence order with Schneider matrix for Glutamic acid |
| QSO3_SCF | Quasi-sequence order with Schneider matrix for Phenylalanine |
| QSO3_SCG | Quasi-sequence order with Schneider matrix for Glycine |
| QSO3_SCH | Quasi-sequence order with Schneider matrix for Histidine |
| QSO3_SCI | Quasi-sequence order with Schneider matrix for Isoleucine |
| QSO3_SCK | Quasi-sequence order with Schneider matrix for Lysine |
| QSO3_SCL | Quasi-sequence order with Schneider matrix for Leucine |
| QSO3_SCM | Quasi-sequence order with Schneider matrix for Methionine |
| QSO3_SCN | Quasi-sequence order with Schneider matrix for Asparagine |
| QSO3_SCP | Quasi-sequence order with Schneider matrix for Proline |
| QSO3_SCQ | Quasi-sequence order with Schneider matrix for Glutamine |
| QSO3_SCR | Quasi-sequence order with Schneider matrix for Arginine |
| QSO3_SCS | Quasi-sequence order with Schneider matrix for Serine |
| QSO3_SCT | Quasi-sequence order with Schneider matrix for Threonine |
| QSO3_SCV | Quasi-sequence order with Schneider matrix for Valine |
| QSO3_SCW | Quasi-sequence order with Schneider matrix for Tryptophan |
| QSO3_SCY | Quasi-sequence order with Schneider matrix for Tyrosine |
| QSO3_GA | Quasi-sequence order with Grantham matrix for Alanine |
| QSO3_GC | Quasi-sequence order with Grantham matrix for Cysteine |
| QSO3_GD | Quasi-sequence order with Grantham matrix for Aspartic acid |
| QSO3_GE | Quasi-sequence order with Grantham matrix for Glutamic acid |
| QSO3_GF | Quasi-sequence order with Grantham matrix for Phenylalanine |
| QSO3_GG | Quasi-sequence order with Grantham matrix for Glycine |
| QSO3_GH | Quasi-sequence order with Grantham matrix for Histidine |
| QSO3_GI | Quasi-sequence order with Grantham matrix for Isoleucine |
| QSO3_GK | Quasi-sequence order with Grantham matrix for Lysine |
| QSO3_GL | Quasi-sequence order with Grantham matrix for Leucine |
| QSO3_GM | Quasi-sequence order with Grantham matrix for Methionine |
| QSO3_GN | Quasi-sequence order with Grantham matrix for Asparagine |
| QSO3_GP | Quasi-sequence order with Grantham matrix for Proline |
| QSO3_GQ | Quasi-sequence order with Grantham matrix for Glutamine |
| QSO3_GR | Quasi-sequence order with Grantham matrix for Arginine |
| QSO3_GS | Quasi-sequence order with Grantham matrix for Serine |
| QSO3_GT | Quasi-sequence order with Grantham matrix for Threonine |
| QSO3_GV | Quasi-sequence order with Grantham matrix for Valine |
| QSO3_GW | Quasi-sequence order with Grantham matrix for Tryptophan |
| QSO3_GY | Quasi-sequence order with Grantham matrix for Tyrosine |
| QSO3_SC1 | Quasi-sequence order with Schneider matrix with lag 1 |
| QSO3_G1 | Quasi-sequence order with Grantham matrix with lag 1 |
| QSO3_SC2 | Quasi-sequence order with Schneider matrix with lag 2 |
| QSO3_G2 | Quasi-sequence order with Grantham matrix with lag 2 |
| QSO3_SC3 | Quasi-sequence order with Schneider matrix with lag 3 |
| QSO3_G3 | Quasi-sequence order with Grantham matrix with lag 3 |
| Note | Top |
Sequence Order Coupling Number (Order 1, Traditional) (2 Features)
| Header | Description |
|---|---|
| SOC1_SC1 | Sequence order coupling number with Schneider matrix for lag 1 |
| SOC1_G1 | Sequence order coupling number with Grantham matrix for lag 1 |
| Note | Top |
Sequence Order Coupling Number (Order 2, Alternate) (4 Features)
| Header | Description |
|---|---|
| SOC2_SC1 | Sequence order coupling number with Schneider matrix for lag 1 |
| SOC2_G1 | Sequence order coupling number with Grantham matrix for lag 1 |
| SOC2_SC2 | Sequence order coupling number with Schneider matrix for lag 2 |
| SOC2_G2 | Sequence order coupling number with Grantham matrix for lag 2 |
| Note | Top |
Sequence Order Coupling Number (Order 3, Gap of 2 residues) (6 Features)
| Header | Description |
|---|---|
| SOC3_SC1 | Sequence order coupling number with Schneider matrix for lag 1 |
| SOC3_G1 | Sequence order coupling number with Grantham matrix for lag 1 |
| SCO3_SC2 | Sequence order coupling number with Schneider matrix for lag 2 |
| SOC3_G2 | Sequence order coupling number with Grantham matrix for lag 2 |
| SOC3_SC3 | Sequence order coupling number with Schneider matrix for lag 3 |
| SOC3_G3 | Sequence order coupling number with Grantham matrix for lag 3 |
| Note | Top |
Binary profile of Amino acids (20 * window/protein length(n) Features)
| Header | Description |
|---|---|
| A1 | Presence/Absence (1 or 0) for Alanine at position 1 |
| C1 | Presence/Absence (1 or 0) for Cysteine at position 1 |
| D1 | Presence/Absence (1 or 0) for Aspartic acid at position 1 |
| E1 | Presence/Absence (1 or 0) for Glutamic acid at position 1 |
| F1 | Presence/Absence (1 or 0) for Phenylalanine at position 1 |
| : | : |
| : | : |
| A2 | Presence/Absence (1 or 0) for Alanine at position 2 |
| C2 | Presence/Absence (1 or 0) for Cysteine at position 2 |
| D2 | Presence/Absence (1 or 0) for Aspartic acid at position 2 |
| E1 | Presence/Absence (1 or 0) for Glutamic acid at position 2 |
| F2 | Presence/Absence (1 or 0) for Phenylalanine at position 2 |
| : | : |
| : | : |
| An | Presence/Absence (1 or 0) for Alanine at position n |
| Cn | Presence/Absence (1 or 0) for Cysteine at position n |
| Dn | Presence/Absence (1 or 0) for Aspartic acid at position n |
| En | Presence/Absence (1 or 0) for Glutamic acid at position n |
| Fn | Presence/Absence (1 or 0) for Phenylalanine at position n |
| Note | Top |
Dipeptide binary profile (400 * window/protein length(n) Features)
| Header | Description |
|---|---|
| AA1 | Presence/Absence (1 or 0) for Alanine-Alanine at position 1 |
| AC1 | Presence/Absence (1 or 0) for Alanine-Cysteine at position 1 |
| AD1 | Presence/Absence (1 or 0) for Alanine-Aspartic acid at position 1 |
| AE1 | Presence/Absence (1 or 0) for Alanine-Glutamic acid at position 1 |
| : | : |
| : | : |
| AA2 | Presence/Absence (1 or 0) for Alanine-Alanine at position 2 |
| AC2 | Presence/Absence (1 or 0) for Alanine-Cysteine at position 2 |
| AD2 | Presence/Absence (1 or 0) for Alanine-Aspartic acid at position 2 |
| AE2 | Presence/Absence (1 or 0) for Alanine-Glutamic acid at position 2 |
| : | : |
| : | : |
| AAn | Presence/Absence (1 or 0) for Alanine-Alanine at position n |
| ACn | Presence/Absence (1 or 0) for Alanine-Cysteine at position n |
| ADn | Presence/Absence (1 or 0) for Alanine-Aspartic acid at position n |
| AEn | Presence/Absence (1 or 0) for Alanine-Glutamic acid at position n |
| Note | Top |
Atom and Bond profile (5*total number of atoms(n) + 4*total number of bonds(m) Features)
| Header | Description |
|---|---|
| C1 | Presence/Absence (1 or 0) for Carbon atom at position 1 |
| H1 | Presence/Absence (1 or 0) for Hydrogen atom at position 1 |
| N1 | Presence/Absence (1 or 0) for Nitrogen atom at position 1 |
| O1 | Presence/Absence (1 or 0) for Oxygen atom at position 1 |
| S1 | Presence/Absence (1 or 0) for Sulphur atom at position 1 |
| C2 | Presence/Absence (1 or 0) for Carbon atom at position 2 |
| H2 | Presence/Absence (1 or 0) for Hydrogen atom at position 2 |
| N2 | Presence/Absence (1 or 0) for Nitrogen atom at position 2 |
| O2 | Presence/Absence (1 or 0) for Oxygen atom at position 2 |
| S2 | Presence/Absence (1 or 0) for Sulphur atom at position 2 |
| : | : |
| : | : |
| Cn | Presence/Absence (1 or 0) for Carbon atom at nth position |
| Hn | Presence/Absence (1 or 0) for Hydrogen atom at nth position |
| Nn | Presence/Absence (1 or 0) for Nitrogen atom at nth position |
| On | Presence/Absence (1 or 0) for Oxygen atom at nth position |
| Sn | Presence/Absence (1 or 0) for Sulphur atom at nth position |
| SI1 | Presence/Absence (1 or 0) for single bond at position 1 |
| DO1 | Presence/Absence (1 or 0) for double bond at position 1 |
| CY1 | Presence/Absence (1 or 0) for cyclic ring at position 1 |
| BE1 | Presence/Absence (1 or 0) for benzene ring at position 1 |
| SI2 | Presence/Absence (1 or 0) for single bond at position 2 |
| DO2 | Presence/Absence (1 or 0) for double bond at position 2 |
| CY2 | Presence/Absence (1 or 0) for cyclic ring at position 2 |
| BE2 | Presence/Absence (1 or 0) for benzene ring at position 2 |
| : | : |
| : | : |
| SIm | Presence/Absence (1 or 0) for single bond at mth position |
| DOm | Presence/Absence (1 or 0) for double bond at mth position |
| CYm | Presence/Absence (1 or 0) for cyclic ring at mth position |
| BEm | Presence/Absence (1 or 0) for benzene ring at mth position |
| Note | Top |
Physico-Chemical Properties Profile (25*window/protein length(n) Features)
| Header | Description |
|---|---|
| PC1 | Presence/Absence (1 or 0) for positively charged residues at position 1 |
| NC1 | Presence/Absence (1 or 0) for positively charged residues at position 1 |
| NE1 | Presence/Absence (1 or 0) for neutral charged residues at position 1 |
| PO1 | Presence/Absence (1 or 0) for polar residues at position 1 |
| NP1 | Presence/Absence (1 or 0) for non-polar residues at position 1 |
| AL1 | Presence/Absence (1 or 0) for residues having aliphatic side chain at position 1 |
| CY1 | Presence/Absence (1 or 0) for residues having cyclic side chain at position 1 |
| AR1 | Presence/Absence (1 or 0) for aromatic residues at position 1 |
| AC1 | Presence/Absence (1 or 0) for acidic residues at position 1 |
| BS1 | Presence/Absence (1 or 0) for basic residues at position 1 |
| NE1 | Presence/Absence (1 or 0) for neutral residues based on pH at position 1 |
| HB1 | Presence/Absence (1 or 0) for hydrophobic residues at position 1 |
| HL1 | Presence/Absence (1 or 0) for hydrophilic residues at position 1 |
| NT1 | Presence/Absence (1 or 0) for neutral residues at position 1 |
| HX1 | Presence/Absence (1 or 0) for hydroxylic residues at position 1 |
| SC1 | Presence/Absence (1 or 0) for residues having sulphur content at position 1 |
| SS_HE1 | Presence/Absence (1 or 0) for secondary structure (Helix) residues at position 1 |
| SS_ST1 | Presence/Absence (1 or 0) for secondary structure (Strands) residues at position 1 |
| SS_CO1 | Presence/Absence (1 or 0) for secondary structure (Coil) residues at position 1 |
| SA_BU1 | Presence/Absence (1 or 0) for solvent accessibility (Buried) residues at position 1 |
| SA_EX1 | Presence/Absence (1 or 0) for solvent accessibility (Exposed) residues at position 1 |
| SA_IN1 | Presence/Absence (1 or 0) for solvent accessibility (Intermediate) residues at position 1 |
| TN1 | Presence/Absence (1 or 0) for tiny residues at position 1 |
| SM1 | Presence/Absence (1 or 0) for small residues at position 1 |
| LR1 | Presence/Absence (1 or 0) for large residues at position 1 |
| PC2 | Presence/Absence (1 or 0) for positively charged residues at position 2 |
| NC2 | Presence/Absence (1 or 0) for positively charged residues at position 2 |
| NE2 | Presence/Absence (1 or 0) for neutral charged residues at position 2 |
| PO2 | Presence/Absence (1 or 0) for polar residues at position 2 |
| NP2 | Presence/Absence (1 or 0) for non-polar residues at position 2 |
| AL2 | Presence/Absence (1 or 0) for residues having aliphatic side chain at position 2 |
| CY2 | Presence/Absence (1 or 0) for residues having cyclic side chain at position 2 |
| AR2 | Presence/Absence (1 or 0) for aromatic residues at position 2 |
| AC2 | Presence/Absence (1 or 0) for acidic residues at position 2 |
| BS2 | Presence/Absence (1 or 0) for basic residues at position 2 |
| NE2 | Presence/Absence (1 or 0) for neutral residues based on pH at position 2 |
| HB2 | Presence/Absence (1 or 0) for hydrophobic residues at position 2 |
| HL2 | Presence/Absence (1 or 0) for hydrophilic residues at position 2 |
| NT2 | Presence/Absence (1 or 0) for neutral residues at position 2 |
| HX2 | Presence/Absence (1 or 0) for hydroxylic residues at position 2 |
| SC2 | Presence/Absence (1 or 0) for residues having sulphur content at position 2 |
| SS_HE2 | Presence/Absence (1 or 0) for secondary structure (Helix) residues at position 2 |
| SS_ST2 | Presence/Absence (1 or 0) for secondary structure (Strands) residues at position 2 |
| SS_CO2 | Presence/Absence (1 or 0) for secondary structure (Coil) residues at position 2 |
| SA_BU2 | Presence/Absence (1 or 0) for solvent accessibility (Buried) residues at position 2 |
| SA_EX2 | Presence/Absence (1 or 0) for solvent accessibility (Exposed) residues at position 2 |
| SA_IN2 | Presence/Absence (1 or 0) for solvent accessibility (Intermediate) residues at position 2 |
| TN2 | Presence/Absence (1 or 0) for tiny residues at position 2 |
| SM2 | Presence/Absence (1 or 0) for small residues at position 2 |
| LR2 | Presence/Absence (1 or 0) for large residues at position 2 |
| : | : |
| : | : |
| TNn | Presence/Absence (1 or 0) for tiny residues at position n |
| SMn | Presence/Absence (1 or 0) for small residues at position n |
| LRn | Presence/Absence (1 or 0) for large residues at position n |
| Note | Top |
Amino Acid Index Profile (553 * window/protein length(n) Features)
| Header | Description |
|---|---|
| ANDN920101_1 | Presence/Absence (1 or 0) for ANDN920101 at position 1 |
| : | : |
| : | : |
| KARS160122_1 | Presence/Absence (1 or 0) for KARS160122 at position 1 |
| ANDN920101_2 | Presence/Absence (1 or 0) for ANDN920101 at position 2 |
| : | : |
| : | : |
| KARS160122_2 | Presence/Absence (1 or 0) for KARS160122 at position 2 |
| : | : |
| : | : |
| ANDN920101_n | Presence/Absence (1 or 0) for ANDN920101 at position n |
| : | : |
| : | : |
| KARS160122_2n | Presence/Absence (1 or 0) for KARS160122 at position n |
| Note | Top |