| ADAM33 | ADAM metallopeptidase domain 8 | 1 |
| AKT1 | v-akt murine thymoma viral oncogene homolog 1 | 9 |
| ALKBH4 | anaplastic lymphoma receptor tyrosine kinase | 1 |
| PRMT2 | protein arginine methyltransferase 2 | 1 |
| ANXA3 | annexin A3 | 20 |
| BCL10 | B-cell CLL/lymphoma 10 | 9 |
| BMP7 | bone morphogenetic protein 7 | 29 |
| C19orf29 | cactin, spliceosome C complex subunit | 1 |
| CDKN2A | cyclin-dependent kinase inhibitor 2A | 2 |
| p16 | cyclin-dependent kinase inhibitor 2A | 1764 |
| P16 | cyclin-dependent kinase inhibitor 2A | 85 |
| p16INK4a | cyclin-dependent kinase inhibitor 2A | 40 |
| p16INK4A | cyclin-dependent kinase inhibitor 2A | 14 |
| LY86-AS1 | LY86 antisense RNA 1 | 1 |
| CEBPG | CCAAT/enhancer binding protein (C/EBP), gamma | 1 |
| DAPK1 | death-associated protein kinase 1 | 63 |
| DAP | death-associated protein | 197 |
| EDA | ectodysplasin A | 10 |
| EPHA5 | EPH receptor A5 | 63 |
| ESR1 | estrogen receptor 1 | 109 |
| FLNA | filamin A, alpha | 10 |
| FOS | FBJ murine osteosarcoma viral oncogene homolog | 9 |
| FOXA1 | forkhead box A1 | 10 |
| FOXA2 | forkhead box A2 | 10 |
| FOXB1 | forkhead box B1 | 40 |
| FOXB2 | forkhead box B2 | 9 |
| FOXC2 | forkhead box C2 (MFH-1, mesenchyme forkhead 1) | 10 |
| FOXD1 | forkhead box D1 | 9 |
| FOXD2 | forkhead box D2 | 10 |
| FOXD3 | forkhead box D3 | 30 |
| FOXE1 | forkhead box E1 (thyroid transcription factor 2) | 39 |
| FOXE3 | forkhead box E3 | 30 |
| FOXF2 | forkhead box F2 | 30 |
| FOXG1 | forkhead box G1 | 59 |
| FOXG1B | forkhead box G1 | 40 |
| FOXI1 | forkhead box I1 | 30 |
| FOXI2 | forkhead box I2 | 10 |
| FLJ46831 | forkhead box I2 | 1 |
| FOXJ1 | forkhead box J1 | 11 |
| FOXK1 | forkhead box K1 | 1 |
| FOXL1 | forkhead box L1 | 10 |
| FOXL2 | forkhead box L2 | 49 |
| FOXN4 | forkhead box N4 | 9 |
| FOXQ1 | forkhead box Q1 | 10 |
| FOXR1 | forkhead box R1 | 1 |
| FKHL18 | forkhead box S1 | 1 |
| FZD10 | frizzled family receptor 1 | 31 |
| FZD2 | frizzled family receptor 2 | 10 |
| GAS6 | growth arrest-specific 6 | 10 |
| GFI1 | growth factor independent 1 transcription repressor | 10 |
| GREM1 | gremlin 1, DAN family BMP antagonist | 30 |
| HAND1 | heart and neural crest derivatives expressed 1 | 54 |
| HAND2 | heart and neural crest derivatives expressed 2 | 30 |
| HDAC4 | histone deacetylase 4 | 1 |
| HEYL | hairy/enhancer-of-split related with YRPW motif-like | 20 |
| ID1 | inhibitor of DNA binding 1, dominant negative helix-loop-helix protein | 48 |
| NFKBID | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta | 9 |
| IL1B | interleukin 1, beta | 20 |
| INSM2 | insulin | 10 |
| IRAK1 | interleukin-1 receptor-associated kinase 1 | 9 |
| JAK2 | Janus kinase 2 | 1 |
| JMY | junction mediating and regulatory protein, p53 cofactor | 1 |
| KDM1 | lysine (K)-specific demethylase 1A | 1 |
| KITLG | v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog | 1 |
| PRKCB | protein kinase C, beta | 31 |
| PRKCB1 | protein kinase C, beta | 21 |
| PRKD2 | protein kinase D2 | 1 |
| PRKCH | protein kinase C, eta | 10 |
| PRKCZ | protein kinase C, zeta | 1 |
| RPS6KA4 | ribosomal protein S6 kinase, 90kDa, polypeptide 4 | 1 |
| LRP8 | low density lipoprotein receptor-related protein 8, apolipoprotein e receptor | 1 |
| MAP3K1 | mitogen-activated protein kinase kinase kinase 10 | 22 |
| MAP3K10 | mitogen-activated protein kinase kinase kinase 13 | 1 |
| MAP3K7 | mitogen-activated protein kinase kinase kinase 7 | 38 |
| MAD2L2 | MAD2 mitotic arrest deficient-like 2 (yeast) | 1 |
| MEN1 | multiple endocrine neoplasia I | 24 |
| AMH | anti-Mullerian hormone | 30 |
| MSX2 | msh homeobox 2 | 1 |
| CIAS1 | NLR family, pyrin domain containing 3 | 1 |
| NEUROD1 | neuronal differentiation 1 | 49 |
| NEUROD2 | neuronal differentiation 2 | 20 |
| NFAM1 | NFAT activating protein with ITAM motif 1 | 20 |
| NGFB | nerve growth factor (beta polypeptide) | 33 |
| NEUROG1 | neurogenin 1 | 91 |
| NGN1 | neurogenin 1 | 24 |
| NEUROG2 | neurogenin 2 | 10 |
| NEUROG3 | neurogenin 3 | 30 |
| NKX2-2 | NK2 homeobox 2 | 30 |
| NKX6-1 | NK6 homeobox 1 | 0 |
| CARD15 | nucleotide-binding oligomerization domain containing 2 | 13 |
| NODAL | nodal growth differentiation factor | 10 |
| NR0B1 | nuclear receptor subfamily 0, group B, member 1 | 1 |
| NTRK1 | neurotrophic tyrosine kinase, receptor, type 1 | 10 |
| TrkA | neurotrophic tyrosine kinase, receptor, type 1 | 2 |
| PELI1 | pellino E3 ubiquitin protein ligase 1 | 1 |
| PPARGC1B | peroxisome proliferator-activated receptor gamma | 1 |
| PTCH1 | patched 1 | 1 |
| PTEN | phosphatase and tensin homolog | 9 |
| PTGIS | prostaglandin I2 (prostacyclin) synthase | 30 |
| PTHLH | parathyroid hormone-like hormone | 63 |
| PYDC1 | PYD (pyrin domain) containing 1 | 11 |
| ERC1 | ELKS/RAB6-interacting/CAST family member 1 | 1 |
| RELN | reelin | 78 |
| RIPK3 | receptor-interacting serine-threonine kinase 3 | 33 |
| UBA52 | ubiquitin A-52 residue ribosomal protein fusion product 1 | 1 |
| P8 | S100 calcium binding protein A8 | 170 |
| C14orf39 | chromosome 14 open reading frame 39 | 31 |
| SFRP4 | secreted frizzled-related protein 4 | 3 |
| SFRP5 | secreted frizzled-related protein 5 | 2 |
| SGK1 | serum/glucocorticoid regulated kinase 1 | 1 |
| SHH | sonic hedgehog | 10 |
| SIGIRR | single immunoglobulin and toll-interleukin 1 receptor (TIR) domain | 1 |
| SMOC2 | smoothened, frizzled family receptor | 50 |
| SMARCB1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 | 9 |
| SPHK1 | sphingosine kinase 1 | 9 |
| MAP3K7IP1 | TGF-beta activated kinase 1/MAP3K7 binding protein 1 | 20 |
| MAP3K7IP3 | TGF-beta activated kinase 1/MAP3K7 binding protein 3 | 9 |
| TCF7L1 | transcription factor 7-like 2 (T-cell specific, HMG-box) | 1 |
| TGFA | transforming growth factor, beta 1 | 1 |
| TLL2 | toll-like receptor 9 | 29 |
| TNFSF11 | tumor necrosis factor (ligand) superfamily, member 11 | 20 |
| TNFRSF11A | tumor necrosis factor receptor superfamily, member 11a, NFKB activator | 1 |
| TRIM37 | tripartite motif containing 37 | 9 |
| TWIST1 | twist basic helix-loop-helix transcription factor 1 | 144 |
| USP7 | ubiquitin specific peptidase 7 (herpes virus-associated) | 1 |
| WNT10A | wingless-type MMTV integration site family, member 10B | 9 |
| WNT10B | wingless-type MMTV integration site family, member 1 | 11 |
| WNT2B | wingless-type MMTV integration site family member 2 | 1 |
| WNT3 | wingless-type MMTV integration site family, member 3A | 31 |
| WNT5A | wingless-type MMTV integration site family, member 5A | 10 |
