Representation of Major Biochemical Pathway categories by the genes in PCMdb

A list of genes in PCMdb that can be classified as "Seqeunce specific DNA binding RNA polymerase II transcription factors" by the UniProt database has been provided below.
Search:
Gene Symbol Gene Name # of Entries
TEX2transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)1
TFtranscription factor AP-2 beta (activating enhancer binding protein 2 beta)675
TFAP2Atranscription factor AP-2 gamma (activating enhancer binding protein 2 gamma)10
BARHL1BarH-like homeobox 131
BARHL2BarH-like homeobox 249
BCL11BB-cell CLL/lymphoma 11B (zinc finger protein)10
BHLHE22basic helix-loop-helix family, member e2210
BHLHB5basic helix-loop-helix family, member e2220
ARNTaryl hydrocarbon receptor nuclear translocator-like10
TM6SF1T, brachyury homolog (mouse)22
TT, brachyury homolog (mouse)25493
CREBBPCREB binding protein13
CEBPACCAAT/enhancer binding protein (C/EBP), alpha13
NR2F1nuclear receptor subfamily 2, group F, member 110
NR2F2nuclear receptor subfamily 2, group F, member 210
CREB3L1cAMP responsive element binding protein 3-like 110
CREB1cAMP responsive element binding protein 19
CREB5cAMP responsive element binding protein 51
DLX5distal-less homeobox 570
EGR1early growth response 129
ESRRBestrogen-related receptor beta10
ESR1estrogen receptor 1109
ZFPM1zinc finger protein, FOG family member 11
FOXA1forkhead box A110
FOXA2forkhead box A210
FOXB1forkhead box B140
FOXB2forkhead box B29
FOXC2forkhead box C2 (MFH-1, mesenchyme forkhead 1)10
FOXD1forkhead box D19
FOXD2forkhead box D210
FOXD3forkhead box D330
FOXE1forkhead box E1 (thyroid transcription factor 2)39
FOXE3forkhead box E330
FOXF2forkhead box F230
FOXG1forkhead box G159
FOXG1Bforkhead box G140
FOXI1forkhead box I130
FOXI2forkhead box I210
FLJ46831forkhead box I21
FOXJ1forkhead box J111
FOXK1forkhead box K11
FOXL1forkhead box L110
FOXL2forkhead box L249
FOXN4forkhead box N49
FOXQ1forkhead box Q110
FOXR1forkhead box R11
FKHL18forkhead box S11
GATA2GATA binding protein 231
GATA3GATA binding protein 311
GATA4GATA binding protein 421
GATA5GATA binding protein 510
GATA6GATA binding protein 61
GRHL3grainyhead-like 3 (Drosophila)2
HAND2heart and neural crest derivatives expressed 230
HES5hairy and enhancer of split 5 (Drosophila)1
HEY1hairy/enhancer-of-split related with YRPW motif 19
HEYLhairy/enhancer-of-split related with YRPW motif-like20
TCF2HNF1 homeobox B44
HNF4Ahepatocyte nuclear factor 4, alpha20
ONECUT1one cut homeobox 110
HOXC11homeobox C1130
IRF7interferon regulatory factor 730
TCF21transcription factor 430
MEIS1Meis homeobox 19
MKXmohawk homeobox10
MSX1msh homeobox 1129
MSX2msh homeobox 21
MYOD1myogenic differentiation 1104
NFATC1nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 111
NFATC4nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 41
NFIL3nuclear factor, interleukin 3 regulated1
NFIXnuclear factor I/X (CCAAT-binding transcription factor)1
NEUROG3neurogenin 330
NKX2-1NK2 homeobox 110
TITF1NK2 homeobox 120
NKX2-5NK2 homeobox 530
NR0B1nuclear receptor subfamily 0, group B, member 11
NR1D1nuclear receptor subfamily 1, group D, member 11
NR1I2nuclear receptor subfamily 1, group I, member 210
NR1I3nuclear receptor subfamily 1, group I, member 320
NR2E1nuclear receptor subfamily 2, group E, member 131
NR2F6nuclear receptor subfamily 2, group F, member 61
NR4A3nuclear receptor subfamily 4, group A, member 310
NR5A2nuclear receptor subfamily 5, group A, member 210
NR6A1nuclear receptor subfamily 6, group A, member 11
OLIG2oligodendrocyte lineage transcription factor 229
OTX2orthodenticle homeobox 29
TP53tumor protein p532
PAX3paired box 331
PAX6paired box 616
PTGER3prostaglandin E receptor 3 (subtype EP3)30
PEG3paternally expressed 31
PITX2paired-like homeodomain 263
PLAGL1pleiomorphic adenoma gene-like 11
POU4F1POU class 4 homeobox 141
POU4F2POU class 4 homeobox 249
PPARDperoxisome proliferator-activated receptor delta13
PPARGC1Bperoxisome proliferator-activated receptor gamma1
PGRprogesterone receptor12
PTF1Apancreas specific transcription factor, 1a51
RARAretinoic acid receptor, alpha96
RBPJrecombination signal binding protein for immunoglobulin kappa J region-like2
RESTRE1-silencing transcription factor1
RFX1regulatory factor X, 1 (influences HLA class II expression)1
RORCRAR-related orphan receptor C9
RUNX3runt-related transcription factor 3141
SIX3SIX homeobox 39
SOX1SRY (sex determining region Y)-box 10229
SOX10SRY (sex determining region Y)-box 111
SOX15SRY (sex determining region Y)-box 1751
SOX17SRY (sex determining region Y)-box 1843
SOX2SRY (sex determining region Y)-box 22
SOX7SRY (sex determining region Y)-box 710
SPI1spleen focus forming virus (SFFV) proviral integration oncogene spi113
NR5A1nuclear receptor subfamily 5, group A, member 110
RBPJLrecombination signal binding protein for immunoglobulin kappa J region1
TAGLNT-cell acute lymphocytic leukemia 11
TCF15transcription factor 2110
TFAP2Ctranscription factor AP-4 (activating enhancer binding protein 4)30
TWIST1twist basic helix-loop-helix transcription factor 1144
WT1Wilms tumor 1288
ZNF518Bzinc finger protein 518B9
ZFHX3zinc finger homeobox 39
ZKSCAN2zinc finger with KRAB and SCAN domains 29
ZNF174zinc finger protein 1741
ZSCAN5zinc finger and SCAN domain containing 5A9
ZSCAN1zinc finger and SCAN domain containing 1851
ZSCAN18zinc finger and SCAN domain containing 11
   Team Contact Us Raghava CSIR-IMTECH CSIR