Vaccine portal for Mycobacterium Tuberculosis

Contig Mapping

Contigs are assembled short reads, which are result of Next generation sequencing. The genes can be predicted in these contigs using prokaryotic gene prediction programs.Here we implemented the Glimmer3.02 software to predict the genes in reference with mycobacterial genome.
The predicted genes were then blast against the mycobacterium database for their annotation.
Submit Contigs

Please upload the contigs in a file:

Select Reference genome :
Select e-value for BLAST search :

Example files to test the contig mapping module
Contig input file Download
Glimmer predicted genes Download
Blast output of predicted genes Download