Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to HLA prediction using CTLpred and nHLApred The second last tells us the HLA alleles to which peptide is binding. The last column counts the number of HLA alleles for that peptide.


Total number of predicted 9mer peptides are 279773 (corresponding to browse type ctl)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count) HLA Alleles HLA alleles (count)
VIR000010169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]10TEFGVTCTF HLA-B*2702,HLA-B*2705,HLA-B*3701,HLA-B40,HLA-B*4403,HLA-B*5401,HLA-B61,MHC-Kk,MHC-Ld 9 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*0204 10
VIR000021169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]21HRRLSPDEV HLA-B*0702,HLA-B*2702,HLA-B*2705 3 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*6802 10
VIR000023169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]23RLSPDEVAR HLA-A1,HLA-A*1101,HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1,HLA-B*2705 8 HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
VIR000025169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]25SPDEVARYL HLA-A24,HLA-B*0702,HLA-B*3501,HLA-B*3701,HLA-B*3801,HLA-B*3901,HLA-B*3902,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5301,HLA-B*5401,HLA-B60,HLA-B7,HLA-Cw*0401,HLA-Cw*0702,MHC-Ld 18 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01 10
VIR000027169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]27DEVARYLFR HLA-A68.1,HLA-B40,HLA-B*4403 3 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR000028169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]28EVARYLFRR HLA-A*1101,HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1 6 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR000029169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]29VARYLFRRV HLA-B*0702,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5801,HLA-B7,HLA-B8 8 HLA-B*51,HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR000030169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]30ARYLFRRVV HLA-A2.1,HLA-B14,HLA-B*2702,HLA-B*2705,HLA-B*51,HLA-B*5201,HLA-B*5401 7 HLA-B*5301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301 11
VIR000032169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]32YLFRRVVSW HLA-A2,HLA-A2.1,HLA-A3,HLA-B14,HLA-B*2702,HLA-B*51,HLA-B*5301,HLA-B*5401,HLA-B*5801,HLA-B62 10 HLA-A*0201,HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301,HLA-A*6801 13
VIR000034169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]34FRRVVSWGR HLA-A20 Cattle,HLA-B*2702,HLA-B*2705,HLA-B*51,HLA-B*5401 5 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
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