Vaccine portal for Mycobacterium Tuberculosis

Browse Strains on Number of Epitopes

This module display number well chaterize epitopes and MHC binders in each strain. In order to compute number of epitopes found in a strain, we searched each epitope (length between 8 to 25 residues) in Immuno Epitope Database (IEDB) against all protein sequences of a strain. Following table shows number of epitopes in each strain, second column contain name of strain, third, fourth and fifth columns contain number of B-cell epitopes, T-cell epitopes and MHC binders respectively (click for detail mapping of these epitopes).

Click here for graphical persentation of these epitopes on strains

S.N.	Strain	B-Epitopes	T-Epitopes	MHC binder
1	M_canettii_CIPT_140010059_3861	495	1140	948
2	M_canettii_CIPT_140010059	459	1167	908
3	M_canettii_CIPT_140060008	473	1252	949
4	M_canettii_CIPT_140070008	473	1092	906
5	M_canettii_CIPT_140070010	447	1126	897
6	M_canettii_CIPT_140070017	494	1327	986
7	Mtb_7199-99	536	1435	1104
8	Mtb_CCDC5079	487	1209	966
9	Mtb_CDC_1551	527	1460	1066
10	Mtb_CTRI-2	531	1486	1115
11	Mtb_F11	536	1478	1111
12	Mtb_KZN_4207-3996	536	1483	1113
13	Mtb_KZN_4207	482	1345	1037
14	Mtb_UT205	527	1478	1043
15	Mtb_CCDC5180	492	1220	974
16	Mtb_KZN_1435	535	1489	1110
17	Mtb_KZN_V2475	528	1464	1095
18	Mtb_KZN_605	536	1491	1108
19	Mtb_KZN_R506	528	1461	1097
20	Mtb_RGTB327	440	1197	879
21	Mtb_RGTB423	439	1313	919
22	Mtb_H37Rv_broad	493	1346	1029
23	Mtb_H37Rv	540	1500	1117
24	Mtb_H37Ra	540	1499	1116
25	M_bovis_AF2122_97	526	1443	1056
26	M_bovis_BCG_str_Korea	474	1099	964
27	M_bovis_BCG_str_Mexico	472	1104	952
28	M_bovis_BCG_str_Pasteur_1173P2	472	1100	953
29	M_bovis_BCG_str_Tokyo_172	485	1151	972
30	M_abscessus	98	168	201
31	M_avium_104	144	282	318
32	M_avium_K-10	153	288	314
33	M_chubuense_NBB4	119	176	224
34	M_gilvum_PYR-GCK	114	164	210
35	M_gilvum_Spyr1	116	162	201
36	M_indicus_prani_MTCC_9506	141	215	279
37	M_intracellulare_ATCC_13950	148	260	313
38	M_intracellulare_MOTT-02	148	262	315
39	M_intracellulare_MOTT-64	148	261	313
40	M_kansasii_ATCC_12478	202	435	455
41	M_leprae_Br4923	161	331	277
42	M_leprae_TN	176	414	298
43	M_liflandiii_128FXT	162	301	345
44	M_marinum	175	357	391
45	M_massiliense_GO_06	59	141	178
46	M_rhodesiae_NBB3	108	158	211
47	M_smegmatis_JS623	115	172	219
48	M_smegmatis_MC2_155	130	202	237
49	M_smegmatis_MKD8	130	200	232
50	M_smegmatis_str_MC2_155	124	193	236
51	M_smegmatis_str_MC2_155_second	129	200	231
52	M_ulcerans_Agy99	143	223	300
53	M_vanbaalenii_PYR-1	113	156	186
54	Mycobacterium_sp_JDM601	83	157	197
55	Mycobacterium_sp_JLS	110	171	225
56	Mycobacterium_sp_KMS	110	169	226
57	Mycobacterium_sp_MCS	110	169	225
58	Mycobacterium_sp_MOTT36Y	151	266	315