Browse Strains on Number of Epitopes


This module display number well chaterize epitopes and MHC binders in each strain. In order to compute number of epitopes found in a strain, we searched each epitope (length between 8 to 25 residues) in Immuno Epitope Database (IEDB) against all protein sequences of a strain. Following table shows number of epitopes in each strain, second column contain name of strain, third, fourth and fifth columns contain number of B-cell epitopes, T-cell epitopes and MHC binders respectively (click for detail mapping of these epitopes).


Click here for graphical persentation of these epitopes on strains
S.N.StrainB-EpitopesT-EpitopesMHC binder
1M_canettii_CIPT_140010059_38614951140948
2M_canettii_CIPT_1400100594591167908
3M_canettii_CIPT_1400600084731252949
4M_canettii_CIPT_1400700084731092906
5M_canettii_CIPT_1400700104471126897
6M_canettii_CIPT_1400700174941327986
7Mtb_7199-9953614351104
8Mtb_CCDC50794871209966
9Mtb_CDC_155152714601066
10Mtb_CTRI-253114861115
11Mtb_F1153614781111
12Mtb_KZN_4207-399653614831113
13Mtb_KZN_420748213451037
14Mtb_UT20552714781043
15Mtb_CCDC51804921220974
16Mtb_KZN_143553514891110
17Mtb_KZN_V247552814641095
18Mtb_KZN_60553614911108
19Mtb_KZN_R50652814611097
20Mtb_RGTB3274401197879
21Mtb_RGTB4234391313919
22Mtb_H37Rv_broad49313461029
23Mtb_H37Rv54015001117
24Mtb_H37Ra54014991116
25M_bovis_AF2122_9752614431056
26M_bovis_BCG_str_Korea4741099964
27M_bovis_BCG_str_Mexico4721104952
28M_bovis_BCG_str_Pasteur_1173P24721100953
29M_bovis_BCG_str_Tokyo_1724851151972
30M_abscessus98168201
31M_avium_104144282318
32M_avium_K-10153288314
33M_chubuense_NBB4119176224
34M_gilvum_PYR-GCK114164210
35M_gilvum_Spyr1116162201
36M_indicus_prani_MTCC_9506141215279
37M_intracellulare_ATCC_13950148260313
38M_intracellulare_MOTT-02148262315
39M_intracellulare_MOTT-64148261313
40M_kansasii_ATCC_12478202435455
41M_leprae_Br4923161331277
42M_leprae_TN176414298
43M_liflandiii_128FXT162301345
44M_marinum175357391
45M_massiliense_GO_0659141178
46M_rhodesiae_NBB3108158211
47M_smegmatis_JS623115172219
48M_smegmatis_MC2_155130202237
49M_smegmatis_MKD8130200232
50M_smegmatis_str_MC2_155124193236
51M_smegmatis_str_MC2_155_second129200231
52M_ulcerans_Agy99143223300
53M_vanbaalenii_PYR-1113156186
54Mycobacterium_sp_JDM60183157197
55Mycobacterium_sp_JLS110171225
56Mycobacterium_sp_KMS110169226
57Mycobacterium_sp_MCS110169225
58Mycobacterium_sp_MOTT36Y151266315