Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interleukin-4 inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IL4pred server. The last column display the score of peptides from IL4pred server.


Total number of predicted 9mer peptides are 171460 (corresponding to browse type th2)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IL4 prediction score
VIR000001169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]1MQRRIMGIE DRB1_0801, DRB1_0806, DRB1_0817 3 0.28
VIR000005169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]5IMGIETEFG DRB1_0401, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0421, DRB1_0423, DRB1_0426 8 0.28
VIR000012169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]12FGVTCTFHG DRB1_0401, DRB1_0405, DRB1_0421, DRB1_0426, DRB5_0101, DRB5_0105 6 0.27
VIR000032169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]32YLFRRVVSW DRB1_0402, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0813, DRB1_0817, DRB1_1114, DRB1_1120, DRB1_1302, DRB1_1323 11 0.44
VIR000033169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]33LFRRVVSWG DRB1_0402, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0813, DRB1_0817 7 0.28
VIR000034169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]34FRRVVSWGR DRB1_0101, DRB1_0102, DRB1_0309, DRB1_0402, DRB1_0405, DRB1_0408, DRB1_0423, DRB1_0701, DRB1_0703, DRB1_1101, DRB1_1114, DRB1_1120, DRB1_1128, DRB1_1302, DRB1_1305, DRB1_1307, DRB1_1323, DRB1_1502, DRB5_0101, DRB5_0105 20 0.28
VIR000037169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]37VVSWGRSSN DRB1_0806, DRB1_1304 2 0.28
VIR000040169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]40WGRSSNVFL DRB1_0101, DRB1_0401, DRB1_0421, DRB1_0426, DRB1_0701, DRB1_0703 6 0.28
VIR000046169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]46VFLRNGARL DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806 4 0.26
VIR000047169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]47FLRNGARLY DRB1_0101, DRB1_0102, DRB1_1114, DRB1_1120, DRB1_1302, DRB1_1323, DRB5_0101, DRB5_0105 8 0.27
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