Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interferon-gamma inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IFNepitope server with ninth column present the alogirithm of IFNepitope program. The last column display the score of peptides from IFNepitope server.


Total number of predicted 9mer peptides are 108182 (corresponding to browse type th1)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IFN-gamma inducing algorithmIFN-gamma inducing Score
VIR000033169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]33LFRRVVSWG DRB1_0402, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0813, DRB1_0817 7 SVM 0.03
VIR000040169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]40WGRSSNVFL DRB1_0101, DRB1_0401, DRB1_0421, DRB1_0426, DRB1_0701, DRB1_0703 6 SVM 0.42
VIR000055169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]55YLDVGSHPE DRB1_0405 1 SVM 0.06
VIR000072169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]72LVQLVTHDR DRB1_0102, DRB1_0401, DRB1_0402, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0421, DRB1_0423, DRB1_0426, DRB1_0804, DRB1_1101, DRB1_1102, DRB1_1104, DRB1_1106, DRB1_1114, DRB1_1120, DRB1_1121, DRB1_1128, DRB1_1301, DRB1_1302, DRB1_1304, DRB1_1305, DRB1_1307, DRB1_1311, DRB1_1322, DRB1_1323, DRB1_1327, DRB1_1328, DRB5_0101, DRB5_0105 31 SVM 0.13
VIR000120169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]120YGCHENYLI DRB1_0402, DRB1_0421, DRB1_0701, DRB1_0703, DRB1_1502 5 SVM 0.11
VIR000126169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]126YLIVRAGEF DRB1_0101, DRB1_0309, DRB1_0701, DRB1_0703, DRB1_0801, DRB1_0802, DRB1_1101, DRB1_1128, DRB1_1305, DRB1_1307, DRB1_1321, DRB5_0101, DRB5_0105 13 SVM 0.70
VIR000127169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]127LIVRAGEFS DRB1_0813 1 SVM 0.42
VIR000128169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]128IVRAGEFSR DRB5_0101, DRB5_0105 2 SVM 0.34
VIR000166169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]166YCLSQRAEH DRB1_0305, DRB1_0801, DRB1_0802, DRB1_1101, DRB1_1114, DRB1_1307, DRB1_1321, DRB1_1323 8 SVM 0.10
VIR000208169629269 YP 001702918.1 hypotheticalproteinMAB 2183[MycobacteriumabscessusATCC19977]208VIVGDSNMA DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0311, DRB1_0402 5 SVM 0.00
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