Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interleukin-4 inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IL4pred server. The last column display the score of peptides from IL4pred server.


Total number of predicted 9mer peptides are 171460 (corresponding to browse type th2)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IL4 prediction score
VIR08315531794416 NP 856909.1 integralmembranetransportprotein[MycobacteriumbovisAF2122/97]183VGMTVAIAA DRB1_0101, DRB1_0102, DRB1_0401, DRB1_0402, DRB1_0426, DRB1_0701, DRB1_0703, DRB1_1101, DRB1_1104, DRB1_1106, DRB1_1311, DRB1_1506, DRB5_0101, DRB5_0105 14 0.34
VIR08317231794416 NP 856909.1 integralmembranetransportprotein[MycobacteriumbovisAF2122/97]200YRWGHHVGR DRB1_0305, DRB1_0309 2 0.28
VIR08317431794416 NP 856909.1 integralmembranetransportprotein[MycobacteriumbovisAF2122/97]202WGHHVGRLV DRB1_1114, DRB1_1120, DRB1_1302, DRB1_1323 4 0.28
VIR08318131794416 NP 856909.1 integralmembranetransportprotein[MycobacteriumbovisAF2122/97]209LVTHPDSEQ DRB1_0402 1 0.21
VIR08319031794416 NP 856909.1 integralmembranetransportprotein[MycobacteriumbovisAF2122/97]218LLLRVLGIT DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0817 5 0.28
VIR08319131794416 NP 856909.1 integralmembranetransportprotein[MycobacteriumbovisAF2122/97]219LLRVLGITL DRB1_0101, DRB1_0102, DRB1_0701, DRB1_0703, DRB1_1501, DRB1_1502, DRB1_1506, DRB5_0101, DRB5_0105 9 0.31
VIR08319931794416 NP 856909.1 integralmembranetransportprotein[MycobacteriumbovisAF2122/97]227LIVAAVAES DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_0401, DRB1_0402, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0421, DRB1_0423, DRB1_0426, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0813, DRB1_1101, DRB1_1102, DRB1_1104, DRB1_1106, DRB1_1107, DRB1_1114, DRB1_1120, DRB1_1121, DRB1_1128, DRB1_1301, DRB1_1302, DRB1_1304, DRB1_1305, DRB1_1307, DRB1_1311, DRB1_1321, DRB1_1322, DRB1_1323, DRB1_1327, DRB1_1328 41 0.21
VIR08320831794416 NP 856909.1 integralmembranetransportprotein[MycobacteriumbovisAF2122/97]236LHASAAVGA DRB1_0102 1 0.25
VIR08323831794416 NP 856909.1 integralmembranetransportprotein[MycobacteriumbovisAF2122/97]266LRDLFATIF DRB1_0101, DRB1_0102 2 0.22
VIR08326231794416 NP 856909.1 integralmembranetransportprotein[MycobacteriumbovisAF2122/97]290MLPVALALA DRB1_0804, DRB1_1307 2 0.27
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