Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to MHC class I prediction using Propred1. The second last tells us the MHC class I alleles to which peptide is binding. The last column counts the number of MHC class I alleles for that peptide.


Total number of predicted 9mer peptides are 1228129 (corresponding to browse type mhcI)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count)
VIR008545339630643 YP 004722285.1 hypotheticalproteinMAF 05800[MycobacteriumafricanumGM041182]73LRGLGQFSD HLA-B*2702 1
VIR008547339630643 YP 004722285.1 hypotheticalproteinMAF 05800[MycobacteriumafricanumGM041182]75GLGQFSDEF HLA-A2.1,HLA-A3,HLA-B*2702,HLA-B62,HLA-Cw*0702,MHC-Ld 6
VIR008548339630643 YP 004722285.1 hypotheticalproteinMAF 05800[MycobacteriumafricanumGM041182]76LGQFSDEFL HLA-B*3701,HLA-B*3902,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5301,HLA-B60,HLA-B7,MHC-Dd 10
VIR008549339630643 YP 004722285.1 hypotheticalproteinMAF 05800[MycobacteriumafricanumGM041182]77GQFSDEFLR HLA-A*1101,HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1,HLA-B*2702,HLA-B*2705 8
VIR008550339630643 YP 004722285.1 hypotheticalproteinMAF 05800[MycobacteriumafricanumGM041182]78QFSDEFLRW HLA-B*5801,HLA-Cw*0401 2
VIR008551339630643 YP 004722285.1 hypotheticalproteinMAF 05800[MycobacteriumafricanumGM041182]79FSDEFLRWL HLA-A*0201,HLA-A1,HLA-A2.1,HLA-B*3501,HLA-B*3801,HLA-B*3901,HLA-B*3902,HLA-B*51,HLA-B*5301,HLA-B*5401,HLA-B*5801,HLA-B60,HLA-Cw*0401,HLA-Cw*0602 14
VIR008552339630643 YP 004722285.1 hypotheticalproteinMAF 05800[MycobacteriumafricanumGM041182]80SDEFLRWLA HLA-B*3701,HLA-B40,HLA-B61 3
VIR008553339630643 YP 004722285.1 hypotheticalproteinMAF 05800[MycobacteriumafricanumGM041182]81DEFLRWLAG HLA-B40,HLA-B61 2
VIR008554339630643 YP 004722285.1 hypotheticalproteinMAF 05800[MycobacteriumafricanumGM041182]82EFLRWLAGV HLA-A2.1,HLA-B*5103,HLA-Cw*0401,MHC-Kd 4
VIR008555339630643 YP 004722285.1 hypotheticalproteinMAF 05800[MycobacteriumafricanumGM041182]83FLRWLAGVR HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1,HLA-B*51,HLA-B*5401 7
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