Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to HLA prediction using CTLpred and nHLApred The second last tells us the HLA alleles to which peptide is binding. The last column counts the number of HLA alleles for that peptide.


Total number of predicted 9mer peptides are 279773 (corresponding to browse type ctl)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count) HLA Alleles HLA alleles (count)
VIR031709339632409 YP 004724051.1 phenyloxazolinesynthase[MycobacteriumafricanumGM041182]371ALHPDVDLL HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-B*2705,HLA-B*3701,HLA-B*3902,HLA-B62,HLA-B7,HLA-Cw*0301,HLA-Cw*0401,MHC-Db revised,MHC-Dd 14 HLA-A*0301,HLA-A2.1,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR031713339632409 YP 004724051.1 phenyloxazolinesynthase[MycobacteriumafricanumGM041182]375DVDLLVGDF HLA-A1,HLA-B*3801,HLA-Cw*0401,HLA-Cw*0702 4 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR031739339632409 YP 004724051.1 phenyloxazolinesynthase[MycobacteriumafricanumGM041182]401ARAQAVQEA HLA-B*2702,HLA-B*2705 2 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301 10
VIR031755339632409 YP 004724051.1 phenyloxazolinesynthase[MycobacteriumafricanumGM041182]417SAYPGLSVL HLA-A*0205,HLA-B14,HLA-B*2702,HLA-B*2705,HLA-B*3501,HLA-B*3901,HLA-B*3902,HLA-B40,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5201,HLA-B*5401,HLA-B*5801,HLA-B60,HLA-B7,HLA-B8,HLA-Cw*0301,HLA-Cw*0401,MHC-Db revised,MHC-Kb 21 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR031756339632409 YP 004724051.1 phenyloxazolinesynthase[MycobacteriumafricanumGM041182]418AYPGLSVLR HLA-A*3101,HLA-A*3302 2 HLA-A24,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
VIR031762339632409 YP 004724051.1 phenyloxazolinesynthase[MycobacteriumafricanumGM041182]424VLRDLSRHR HLA-A20 Cattle,HLA-A*3302,HLA-A68.1 3 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR031767339632409 YP 004724051.1 phenyloxazolinesynthase[MycobacteriumafricanumGM041182]429SRHRGTQVL HLA-B14,HLA-B*2702,HLA-B*2705,HLA-B*3901,HLA-B*3902,MHC-Dd 6 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR031774339632409 YP 004724051.1 phenyloxazolinesynthase[MycobacteriumafricanumGM041182]436VLAPVVFTS HLA-A3 1 HLA-A*0203,HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR031776339632409 YP 004724051.1 phenyloxazolinesynthase[MycobacteriumafricanumGM041182]438APVVFTSAL HLA-A2.1,HLA-B*0702,HLA-B*3501,HLA-B*3801,HLA-B*3902,HLA-B40,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5301,HLA-B*5401,HLA-B60,HLA-B7,HLA-B8,HLA-Cw*0301,HLA-Cw*0401,HLA-Cw*0602,HLA-Cw*0702,MHC-Db,MHC-Kb,MHC-Kd,MHC-Ld 23 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR031781339632409 YP 004724051.1 phenyloxazolinesynthase[MycobacteriumafricanumGM041182]443TSALGLGDL HLA-B*3501,HLA-B*3902,HLA-B*5801,HLA-B60,HLA-B7,HLA-Cw*0401,MHC-Db revised,MHC-Ld 8 HLA-A2,HLA-B*3501,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
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