Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interferon-gamma inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IFNepitope server with ninth column present the alogirithm of IFNepitope program. The last column display the score of peptides from IFNepitope server.


Total number of predicted 9mer peptides are 108182 (corresponding to browse type th1)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IFN-gamma inducing algorithmIFN-gamma inducing Score
VIR05017831791628 NP 854121.1 transmembranetransportproteinMmpL4[MycobacteriumbovisAF2122/97]20IARMIHAFA DRB1_0802, DRB1_0804, DRB1_1307 3 SVM 0.27
VIR05018131791628 NP 854121.1 transmembranetransportproteinMmpL4[MycobacteriumbovisAF2122/97]23MIHAFAVPI DRB1_0101, DRB1_0102, DRB1_0701, DRB1_0703 4 SVM 0.37
VIR05018231791628 NP 854121.1 transmembranetransportproteinMmpL4[MycobacteriumbovisAF2122/97]24IHAFAVPII DRB1_1102, DRB1_1104, DRB1_1106, DRB1_1121, DRB1_1301, DRB1_1311, DRB1_1322, DRB1_1327, DRB1_1328, DRB1_1501, DRB1_1506 11 SVM 0.45
VIR05019031791628 NP 854121.1 transmembranetransportproteinMmpL4[MycobacteriumbovisAF2122/97]32ILGWLAVCV DRB1_0402 1 SVM 0.42
VIR05019131791628 NP 854121.1 transmembranetransportproteinMmpL4[MycobacteriumbovisAF2122/97]33LGWLAVCVV DRB1_0423, DRB1_0804, DRB1_1101, DRB1_1104, DRB1_1106, DRB1_1307, DRB1_1311 7 SVM 0.44
VIR05019631791628 NP 854121.1 transmembranetransportproteinMmpL4[MycobacteriumbovisAF2122/97]38VCVVVTVFV DRB1_0404, DRB1_0423 2 SVM 0.35
VIR05019831791628 NP 854121.1 transmembranetransportproteinMmpL4[MycobacteriumbovisAF2122/97]40VVVTVFVPS DRB1_0401, DRB1_0402, DRB1_0421, DRB1_0426 4 SVM 0.04
VIR05022631791628 NP 854121.1 transmembranetransportproteinMmpL4[MycobacteriumbovisAF2122/97]68FEAMGRIGM DRB1_0309, DRB1_0801, DRB1_0802, DRB1_0813, DRB1_0817, DRB1_1101, DRB1_1120, DRB1_1128, DRB1_1302, DRB1_1305, DRB1_1307, DRB1_1321, DRB1_1502 13 SVM 0.16
VIR05024631791628 NP 854121.1 transmembranetransportproteinMmpL4[MycobacteriumbovisAF2122/97]88MVIIEGNQP DRB1_0101, DRB1_0102, DRB1_0301, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0311, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0423, DRB1_1501, DRB1_1502, DRB1_1506, DRB5_0101, DRB5_0105 17 SVM 0.40
VIR05026331791628 NP 854121.1 transmembranetransportproteinMmpL4[MycobacteriumbovisAF2122/97]105YDGLVAQLR DRB5_0101, DRB5_0105 2 SVM 0.39
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