Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interferon-gamma inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IFNepitope server with ninth column present the alogirithm of IFNepitope program. The last column display the score of peptides from IFNepitope server.


Total number of predicted 9mer peptides are 108182 (corresponding to browse type th1)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IFN-gamma inducing algorithmIFN-gamma inducing Score
VIR032838339632455 YP 004724097.1 alkylhydroperoxidereductaseC[MycobacteriumafricanumGM041182]94FQWRAQHND DRB1_0801, DRB1_0817 2 SVM 0.11
VIR032854339632455 YP 004724097.1 alkylhydroperoxidereductaseC[MycobacteriumafricanumGM041182]110MLSDIKREL DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_1107 8 SVM 0.34
VIR032858339632455 YP 004724097.1 alkylhydroperoxidereductaseC[MycobacteriumafricanumGM041182]114IKRELSQAA DRB1_0102, DRB1_0401, DRB1_0421, DRB1_0426 4 SVM 0.17
VIR032869339632455 YP 004724097.1 alkylhydroperoxidereductaseC[MycobacteriumafricanumGM041182]125LNADGVADR DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_0421, DRB1_1107 9 SVM 0.38
VIR032912339632455 YP 004724097.1 alkylhydroperoxidereductaseC[MycobacteriumafricanumGM041182]168LQSDELCAC DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_1107 8 SVM 0.13
VIR032957339632473 YP 004724115.1 nucleosidediphosphatekinase[MycobacteriumafricanumGM041182]26IERKGLTIA DRB1_0813 1 SVM 0.03
VIR032967339632473 YP 004724115.1 nucleosidediphosphatekinase[MycobacteriumafricanumGM041182]36LQLRTVSAE DRB1_0402, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0813, DRB1_0817, DRB1_1304 8 SVM 0.55
VIR032969339632473 YP 004724115.1 nucleosidediphosphatekinase[MycobacteriumafricanumGM041182]38LRTVSAELA DRB1_0101, DRB1_0102, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0311, DRB1_0404, DRB1_0423 8 SVM 0.52
VIR032989339632473 YP 004724115.1 nucleosidediphosphatekinase[MycobacteriumafricanumGM041182]58FFGSLLEFI DRB1_0701, DRB1_0703 2 SVM 0.05
VIR033006339632473 YP 004724115.1 nucleosidediphosphatekinase[MycobacteriumafricanumGM041182]75IVEGTRAIA DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0311, DRB1_1107 5 SVM 0.28
Showing 1 to 10 of 1,000 entries