Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interleukin-4 inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IL4pred server. The last column display the score of peptides from IL4pred server.


Total number of predicted 9mer peptides are 171460 (corresponding to browse type th2)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IL4 prediction score
SEC137680449065728 YP 007432811.1 hypothe74VDLAKSLRI DRB1_0701, DRB1_0703 2 0.22
SEC137682449065728 YP 007432811.1 hypothe76LAKSLRIAA DRB1_1107 1 0.22
SEC137686449065728 YP 007432811.1 hypothe80LRIAAKIYS DRB1_0101, DRB1_0102, DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_0402, DRB1_0404, DRB1_0423, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0813, DRB1_0817, DRB1_1101, DRB1_1102, DRB1_1104, DRB1_1106, DRB1_1107, DRB1_1114, DRB1_1120, DRB1_1121, DRB1_1128, DRB1_1301, DRB1_1302, DRB1_1304, DRB1_1305, DRB1_1307, DRB1_1311, DRB1_1321, DRB1_1322, DRB1_1323, DRB1_1327, DRB1_1328, DRB1_1501, DRB1_1502, DRB1_1506, DRB5_0101, DRB5_0105 43 0.29
SEC137704449065729 YP 007432812.1 hypothe4VFIIDPTIS DRB1_0101, DRB1_0102, DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_0401, DRB1_0402, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0421, DRB1_0423, DRB1_0426, DRB1_0813, DRB1_1101, DRB1_1102, DRB1_1104, DRB1_1106, DRB1_1107, DRB1_1121, DRB1_1128, DRB1_1305, DRB1_1307, DRB1_1311, DRB1_1322, DRB5_0101, DRB5_0105 32 0.30
SEC137705449065729 YP 007432812.1 hypothe5FIIDPTISA DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_0401, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0421, DRB1_0423, DRB1_0426, DRB1_0802, DRB1_0813, DRB1_0817, DRB1_1101, DRB1_1107, DRB1_1114, DRB1_1128, DRB1_1305, DRB1_1307, DRB1_1321, DRB1_1323, DRB1_1502 26 0.30
SEC137717449065729 YP 007432812.1 hypothe17LYDLLGIGI DRB1_0101, DRB1_0102 2 0.23
SEC137731449065729 YP 007432812.1 hypothe31ILYSSLEYF DRB1_0301, DRB1_0309, DRB1_0701, DRB1_0703 4 0.29
SEC137733449065729 YP 007432812.1 hypothe33YSSLEYFEK DRB5_0101, DRB5_0105 2 0.99
SEC137736449065729 YP 007432812.1 hypothe36LEYFEKALE DRB1_0801, DRB1_0806, DRB1_0817, DRB1_1301, DRB1_1304, DRB1_1321, DRB1_1327, DRB1_1328 8 0.28
SEC137750449065729 YP 007432812.1 hypothe50FPGDGWLGS DRB1_0401 1 0.21
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