Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interferon-gamma inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IFNepitope server with ninth column present the alogirithm of IFNepitope program. The last column display the score of peptides from IFNepitope server.


Total number of predicted 9mer peptides are 108182 (corresponding to browse type th1)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IFN-gamma inducing algorithmIFN-gamma inducing Score
VIR228494121639596 YP 979820.1 bifunctionalmembrane-associatedpenicillin-bindingprotein1A/1BponA2[MycobacteriumbovisBCG675MKPIANNFG DRB1_0401, DRB1_0402, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0421, DRB1_0423, DRB1_0426 9 SVM 0.02
VIR228542121639596 YP 979820.1 bifunctionalmembrane-associatedpenicillin-bindingprotein1A/1BponA2[MycobacteriumbovisBCG723FQVADQTNS DRB1_0305, DRB1_0309, DRB1_0408, DRB1_0813 4 SVM 0.03
VIR228622121639677 YP 979901.1 19kDalipoproteinantigenprecursorlpqH[MycobacteriumbovisBCGstr.Pasteur1173P2]1MKRGLTVAV DRB1_0102, DRB1_0301, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_0402, DRB1_1107 9 MERCI 0.99
VIR228630121639677 YP 979901.1 19kDalipoproteinantigenprecursorlpqH[MycobacteriumbovisBCGstr.Pasteur1173P2]9VAGAAILVA DRB1_1101, DRB1_1104, DRB1_1106, DRB1_1311 4 SVM 0.12
VIR228673121639677 YP 979901.1 19kDalipoproteinantigenprecursorlpqH[MycobacteriumbovisBCGstr.Pasteur1173P2]52VVIDGKDQN DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_1107, DRB1_1304 9 SVM 0.03
VIR228695121639677 YP 979901.1 19kDalipoproteinantigenprecursorlpqH[MycobacteriumbovisBCGstr.Pasteur1173P2]74VNIAIGGAA DRB1_0102 1 SVM 0.26
VIR228721121639677 YP 979901.1 19kDalipoproteinantigenprecursorlpqH[MycobacteriumbovisBCGstr.Pasteur1173P2]100VGLGNVNGV DRB1_0301, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_1107 7 SVM 0.28
VIR228751121639677 YP 979901.1 19kDalipoproteinantigenprecursorlpqH[MycobacteriumbovisBCGstr.Pasteur1173P2]130YKITGTATG DRB1_0309, DRB1_0401, DRB1_0402, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0421, DRB1_0426, DRB1_0801, DRB1_0802, DRB1_1101, DRB1_1114, DRB1_1120, DRB1_1128, DRB1_1302, DRB1_1305, DRB1_1307, DRB1_1321, DRB1_1323, DRB5_0101, DRB5_0105 21 SVM 0.18
VIR228775121639721 YP 979945.1 hypotheticalproteinBCG 3866c[MycobacteriumbovisBCGstr.Pasteur1173P2]3LVDRVRGAV DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806 4 SVM 0.36
VIR228779121639721 YP 979945.1 hypotheticalproteinBCG 3866c[MycobacteriumbovisBCGstr.Pasteur1173P2]7VRGAVTGMS DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_0401, DRB1_0402, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0421, DRB1_0423, DRB1_0426, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_1101, DRB1_1102, DRB1_1104, DRB1_1106, DRB1_1107, DRB1_1114, DRB1_1121, DRB1_1128, DRB1_1301, DRB1_1305, DRB1_1307, DRB1_1311, DRB1_1321, DRB1_1322, DRB1_1323, DRB1_1327, DRB1_1328 37 SVM 0.26
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