Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to HLA prediction using CTLpred and nHLApred The second last tells us the HLA alleles to which peptide is binding. The last column counts the number of HLA alleles for that peptide.


Total number of predicted 9mer peptides are 279773 (corresponding to browse type ctl)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count) HLA Alleles HLA alleles (count)
VIR08144431794262 NP 856755.1 monooxygenase[MycobacteriumbovisAF2122/97]174DYSGKKVVV HLA-A*3302,HLA-B*5103,HLA-B*5201,HLA-Cw*0401,MHC-Kd 5 HLA-A*2402,HLA-B*51,HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 12
VIR08145231794262 NP 856755.1 monooxygenase[MycobacteriumbovisAF2122/97]182VIGSGATAV HLA-A*0201,HLA-A*0205,HLA-B*51,HLA-B*5301,HLA-B62 5 HLA-B*5301,HLA-B*5401,HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 12
VIR08145431794262 NP 856755.1 monooxygenase[MycobacteriumbovisAF2122/97]184GSGATAVTL HLA-B*3501,HLA-B*3902,HLA-B*5801,HLA-B60,HLA-B7,MHC-Db revised,MHC-Ld 7 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01 10
VIR08145531794262 NP 856755.1 monooxygenase[MycobacteriumbovisAF2122/97]185SGATAVTLV HLA-B*4403,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5201,HLA-B61,MHC-Dd 7 HLA-B*5301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
VIR08146931794262 NP 856755.1 monooxygenase[MycobacteriumbovisAF2122/97]199SNPGSAAHV MHC-Dd 1 HLA-B*3501,HLA-B*5301,HLA-B*5401,HLA-B*51,HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01 15
VIR08147231794262 NP 856755.1 monooxygenase[MycobacteriumbovisAF2122/97]202GSAAHVTML HLA-B14,HLA-B*3501,HLA-B*3701,HLA-B*3902,HLA-B40,HLA-B*5801,HLA-B60,HLA-B7,HLA-Cw*0401,MHC-Db revised,MHC-Ld 11 HLA-A*0203,HLA-B*51,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR08147931794262 NP 856755.1 monooxygenase[MycobacteriumbovisAF2122/97]209MLQRSPSYI HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-B*51,HLA-B*5101,HLA-B*5301,HLA-B62,MHC-Kk 10 HLA-A11,HLA-A3,HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*6801 13
VIR08148231794262 NP 856755.1 monooxygenase[MycobacteriumbovisAF2122/97]212RSPSYIFSL HLA-A2,HLA-A2.1,HLA-A24,HLA-B*0702,HLA-B*2705,HLA-B*3501,HLA-B*3902,HLA-B*5301,HLA-B*5801,HLA-B60,HLA-B7,HLA-Cw*0401,MHC-Dd,MHC-Kb,MHC-Ld 15 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR08148531794262 NP 856755.1 monooxygenase[MycobacteriumbovisAF2122/97]215SYIFSLPAV HLA-A24,HLA-Cw*0401,MHC-Kd 3 HLA-A24,HLA-A*2402,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR08149531794262 NP 856755.1 monooxygenase[MycobacteriumbovisAF2122/97]225KISEVLGRF HLA-A24,HLA-A3,HLA-B*0702,HLA-B*2702,HLA-B*3501,HLA-B*3801,HLA-B*5801,HLA-B62,HLA-Cw*0702,MHC-Ld 10 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
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