Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interleukin-4 inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IL4pred server. The last column display the score of peptides from IL4pred server.


Total number of predicted 9mer peptides are 171460 (corresponding to browse type th2)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IL4 prediction score
VIR1336437392386416 YP 005308045.1 pknE[MycobacteriumtuberculosisUT205]479FGSDFQPQE DRB1_0305, DRB1_0309 2 0.32
VIR1336463392386416 YP 005308045.1 pknE[MycobacteriumtuberculosisUT205]505VGAEPTAIS DRB1_0401, DRB1_0404, DRB1_0421, DRB1_0423, DRB1_0426 5 0.72
VIR1336496392386416 YP 005308045.1 pknE[MycobacteriumtuberculosisUT205]538FNASGTPFV DRB1_0305, DRB1_0309, DRB1_0401, DRB1_0421, DRB1_0426, DRB1_0703 6 0.33
VIR1336503392386416 YP 005308045.1 pknE[MycobacteriumtuberculosisUT205]545FVWDGSMVV DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_0401, DRB1_0405, DRB1_0408, DRB1_0421, DRB1_0426, DRB1_0701, DRB1_0703, DRB1_1107, DRB1_1501, DRB1_1502, DRB1_1506 18 0.28
VIR1336509392386416 YP 005308045.1 pknE[MycobacteriumtuberculosisUT205]551MVVNYQDPS DRB1_0301, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0311, DRB1_1107 6 0.24
VIR1336510392386416 YP 005308045.1 pknE[MycobacteriumtuberculosisUT205]552VVNYQDPSW DRB1_1501, DRB1_1506 2 0.26
VIR1336511392386416 YP 005308045.1 pknE[MycobacteriumtuberculosisUT205]553VNYQDPSWL DRB1_0101, DRB1_0102 2 0.26
VIR1336561392386453 YP 005308082.1 unnamedproteinproduct[MycobacteriumtuberculosisUT205]45VMTDPLLKV DRB1_0301, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0309, DRB1_0311, DRB1_1107, DRB1_1506 9 0.28
VIR1336566392386453 YP 005308082.1 unnamedproteinproduct[MycobacteriumtuberculosisUT205]50LLKVVNSRL DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0423, DRB1_0701, DRB1_0703 7 0.25
VIR1336567392386453 YP 005308082.1 unnamedproteinproduct[MycobacteriumtuberculosisUT205]51LKVVNSRLR DRB1_0402, DRB5_0101, DRB5_0105 3 0.28
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