Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interleukin-4 inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IL4pred server. The last column display the score of peptides from IL4pred server.


Total number of predicted 9mer peptides are 171460 (corresponding to browse type th2)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IL4 prediction score
VIR125723449065010 YP 007432093.1 putativeAMP-bindingenzyme[MycobacteriumbovisBCGstr.Korea1168P]227LGICAPLVA DRB1_0101, DRB1_0102, DRB1_0305, DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0311, DRB1_0401, DRB1_0402, DRB1_0404, DRB1_0408, DRB1_0423, DRB1_0426, DRB1_0802, DRB1_0804, DRB1_0817, DRB1_1101, DRB1_1102, DRB1_1104, DRB1_1106, DRB1_1107, DRB1_1114, DRB1_1121, DRB1_1128, DRB1_1301, DRB1_1304, DRB1_1305, DRB1_1307, DRB1_1311, DRB1_1321, DRB1_1322, DRB1_1323, DRB1_1327, DRB1_1328, DRB1_1501, DRB1_1506 36 0.28
VIR125729449065010 YP 007432093.1 putativeAMP-bindingenzyme[MycobacteriumbovisBCGstr.Korea1168P]233LVARRRAVL DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0813, DRB1_0817, DRB1_1102, DRB1_1114, DRB1_1120, DRB1_1121, DRB1_1301, DRB1_1302, DRB1_1304, DRB1_1322, DRB1_1323, DRB1_1327, DRB1_1328, DRB1_1501, DRB1_1506 19 0.23
VIR125736449065010 YP 007432093.1 putativeAMP-bindingenzyme[MycobacteriumbovisBCGstr.Korea1168P]240VLMSPMSFL DRB1_0701, DRB1_0703 2 0.28
VIR125737449065010 YP 007432093.1 putativeAMP-bindingenzyme[MycobacteriumbovisBCGstr.Korea1168P]241LMSPMSFLR DRB5_0101, DRB5_0105 2 0.28
VIR125743449065010 YP 007432093.1 putativeAMP-bindingenzyme[MycobacteriumbovisBCGstr.Korea1168P]247FLRRPARWM DRB1_0402, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0813, DRB1_0817, DRB1_1114, DRB1_1120, DRB1_1301, DRB1_1302, DRB1_1304, DRB1_1323, DRB1_1327, DRB1_1328 15 0.26
VIR125744449065010 YP 007432093.1 putativeAMP-bindingenzyme[MycobacteriumbovisBCGstr.Korea1168P]248LRRPARWMQ DRB1_0305, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0817, DRB1_1101, DRB1_1102, DRB1_1104, DRB1_1106, DRB1_1107, DRB1_1114, DRB1_1121, DRB1_1301, DRB1_1304, DRB1_1311, DRB1_1322, DRB1_1323, DRB1_1327, DRB1_1328 20 0.28
VIR125750449065010 YP 007432093.1 putativeAMP-bindingenzyme[MycobacteriumbovisBCGstr.Korea1168P]254WMQLLATSG DRB1_0101, DRB1_0405, DRB1_0408, DRB5_0101, DRB5_0105 5 0.28
VIR125751449065010 YP 007432093.1 putativeAMP-bindingenzyme[MycobacteriumbovisBCGstr.Korea1168P]255MQLLATSGR DRB1_0102, DRB1_0301, DRB1_0309, DRB1_0401, DRB1_0402, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0421, DRB1_0423, DRB1_0426, DRB1_0813, DRB1_1128, DRB1_1301, DRB1_1305, DRB1_1307, DRB1_1327, DRB1_1328, DRB5_0101, DRB5_0105 21 0.28
VIR125753449065010 YP 007432093.1 putativeAMP-bindingenzyme[MycobacteriumbovisBCGstr.Korea1168P]257LLATSGRCF DRB5_0101, DRB5_0105 2 0.28
VIR125754449065010 YP 007432093.1 putativeAMP-bindingenzyme[MycobacteriumbovisBCGstr.Korea1168P]258LATSGRCFS DRB1_0306, DRB1_0307, DRB1_0308, DRB1_0311, DRB1_1107 5 0.28
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