Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to MHC class I prediction using Propred1. The second last tells us the MHC class I alleles to which peptide is binding. The last column counts the number of MHC class I alleles for that peptide.


Total number of predicted 9mer peptides are 1228129 (corresponding to browse type mhcI)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count)
VIR017252339631598 YP 004723240.1 polyketidesynthase[MycobacteriumafricanumGM041182]837AGMRREQPL HLA-A24,HLA-B*0702,HLA-B14,HLA-B*3902,HLA-B40,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B60,HLA-B7,HLA-B8,HLA-Cw*0301,MHC-Dd,MHC-Kd 14
VIR017254339631598 YP 004723240.1 polyketidesynthase[MycobacteriumafricanumGM041182]839MRREQPLPH HLA-B*2702,HLA-B*2705 2
VIR017255339631598 YP 004723240.1 polyketidesynthase[MycobacteriumafricanumGM041182]840RREQPLPHG HLA-B*2702,HLA-B*2705 2
VIR017256339631598 YP 004723240.1 polyketidesynthase[MycobacteriumafricanumGM041182]841REQPLPHGL HLA-B*0702,HLA-B*2702,HLA-B*2705,HLA-B*3701,HLA-B40,HLA-B*4403,HLA-B60,HLA-B61,HLA-Cw*0301,HLA-Cw*0602,MHC-Dd,MHC-Kb,MHC-Kk 13
VIR017257339631598 YP 004723240.1 polyketidesynthase[MycobacteriumafricanumGM041182]842EQPLPHGLR HLA-A20 Cattle,HLA-A*3101,HLA-A*3302,HLA-A68.1 4
VIR017258339631598 YP 004723240.1 polyketidesynthase[MycobacteriumafricanumGM041182]843QPLPHGLRA HLA-B*0702,HLA-B*3501,HLA-B40,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5301,HLA-B*5401,MHC-Ld 9
VIR017259339631598 YP 004723240.1 polyketidesynthase[MycobacteriumafricanumGM041182]844PLPHGLRAL HLA-A2,HLA-A2.1 2
VIR017260339631598 YP 004723240.1 polyketidesynthase[MycobacteriumafricanumGM041182]845LPHGLRALA HLA-B*0702,HLA-B*3501,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5301,HLA-B*5401,MHC-Ld 8
VIR017263339631598 YP 004723240.1 polyketidesynthase[MycobacteriumafricanumGM041182]848GLRALAGDL HLA-A2.1,HLA-A3,HLA-B*2705,HLA-B*3501,HLA-B62,HLA-B7,HLA-B8,HLA-Cw*0602 8
VIR017264339631598 YP 004723240.1 polyketidesynthase[MycobacteriumafricanumGM041182]849LRALAGDLY HLA-B*2702,HLA-B*2705,HLA-B*51,HLA-Cw*0702 4
Showing 1 to 10 of 1,000 entries