Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to HLA prediction using CTLpred and nHLApred The second last tells us the HLA alleles to which peptide is binding. The last column counts the number of HLA alleles for that peptide.


Total number of predicted 9mer peptides are 279773 (corresponding to browse type ctl)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count) HLA Alleles HLA alleles (count)
VIR07538631793414 NP 855907.1 phosphotyrosineproteinphosphatasePtpA[MycobacteriumbovisAF2122/97]105ARVRMLRSF HLA-B14,HLA-B*2702,HLA-B*2705,HLA-Cw*0301,HLA-Cw*0702 5 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR07539531793414 NP 855907.1 phosphotyrosineproteinphosphatasePtpA[MycobacteriumbovisAF2122/97]114DPRSGTHAL HLA-B*0702,HLA-B*3501,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5301,HLA-B*5401,HLA-B60,HLA-B7,HLA-B8,HLA-Cw*0401,MHC-Ld 13 HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
VIR07541231793414 NP 855907.1 phosphotyrosineproteinphosphatasePtpA[MycobacteriumbovisAF2122/97]131DHSDFEEVF HLA-B*3801,MHC-Ld 2 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR07541431793414 NP 855907.1 phosphotyrosineproteinphosphatasePtpA[MycobacteriumbovisAF2122/97]133SDFEEVFAV HLA-A*0201,HLA-A2,HLA-B*3701,HLA-B40,HLA-B*4403,HLA-B*5401,HLA-B61,MHC-Kk 8 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-B*2902 10
VIR07542531793414 NP 855907.1 phosphotyrosineproteinphosphatasePtpA[MycobacteriumbovisAF2122/97]144SALPGLHDW HLA-B40,HLA-B*4403,HLA-B*5801,HLA-Cw*0301 4 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR07542631793414 NP 855907.1 phosphotyrosineproteinphosphatasePtpA[MycobacteriumbovisAF2122/97]145ALPGLHDWV HLA-A*0201,HLA-A2,HLA-A2.1,HLA-B62,MHC-Dd 5 HLA-A3,HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR07542931793414 NP 855907.1 phosphotyrosineproteinphosphatasePtpA[MycobacteriumbovisAF2122/97]148GLHDWVDER HLA-A*1101,HLA-A20 Cattle,HLA-A2.1,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1 7 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*6802 10
VIR07545031793426 NP 855919.1 3-oxoacyl-ACPsynthase[MycobacteriumbovisAF2122/97]14MEGTFARPM HLA-B*0702,HLA-B*3701,HLA-B40,HLA-B*4403,HLA-B*51,HLA-B*5301,HLA-B60,HLA-B61,MHC-Kk 9 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR07545331793426 NP 855919.1 3-oxoacyl-ACPsynthase[MycobacteriumbovisAF2122/97]17TFARPMTEL HLA-A24,HLA-B*3801,HLA-B*3902,HLA-Cw*0401,MHC-Kd 5 HLA-B*5102,HLA-B*5103,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR07546231793426 NP 855919.1 3-oxoacyl-ACPsynthase[MycobacteriumbovisAF2122/97]26VTGKAFPYV HLA-A*0201,HLA-B*51,HLA-B*5301,HLA-B*5801 4 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
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