Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to MHC class I prediction using Propred1. The second last tells us the MHC class I alleles to which peptide is binding. The last column counts the number of MHC class I alleles for that peptide.


Total number of predicted 9mer peptides are 1228129 (corresponding to browse type mhcI)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count)
SEC144080378773646 YP 005173379.1 eccA1g244ALKDPSYRL HLA-A*0205,HLA-A2.1,HLA-A3,HLA-B*2705,HLA-B*3501,HLA-B62,HLA-B7,HLA-B8 8
SEC144081378773646 YP 005173379.1 eccA1g245LKDPSYRLK HLA-A1,HLA-A20 Cattle 2
SEC144082378773646 YP 005173379.1 eccA1g246KDPSYRLKT HLA-B*3701 1
SEC144083378773646 YP 005173379.1 eccA1g247DPSYRLKTT HLA-B14,HLA-B*3501,HLA-B*5101,HLA-B*5102,HLA-B8,MHC-Ld 6
SEC144085378773646 YP 005173379.1 eccA1g249SYRLKTTTA HLA-B*0702,HLA-Cw*0401 2
SEC144086378773646 YP 005173379.1 eccA1g250YRLKTTTAE HLA-B*2702,HLA-B*51,HLA-B*5401 3
SEC144087378773646 YP 005173379.1 eccA1g251RLKTTTAEQ HLA-A2.1 1
SEC144088378773646 YP 005173379.1 eccA1g252LKTTTAEQI HLA-A20 Cattle,HLA-B*51,HLA-B*5301 3
SEC144089378773646 YP 005173379.1 eccA1g253KTTTAEQIA HLA-A2,HLA-B*0702,HLA-B*5801 3
SEC144091378773646 YP 005173379.1 eccA1g255TTAEQIASR HLA-A*1101,HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1 6
Showing 1 to 10 of 1,000 entries