Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to MHC class I prediction using Propred1. The second last tells us the MHC class I alleles to which peptide is binding. The last column counts the number of MHC class I alleles for that peptide.


Total number of predicted 9mer peptides are 1228129 (corresponding to browse type mhcI)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count)
VIR015761339631417 YP 004723059.1 multidrugABCtransporterATP-bindingprotein[MycobacteriumafricanumGM041182]425YLFVVDWRV HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-A*3101,HLA-B*2702,HLA-B*2705,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5201,HLA-B*5301,HLA-B*5401,HLA-B62 16
VIR015762339631417 YP 004723059.1 multidrugABCtransporterATP-bindingprotein[MycobacteriumafricanumGM041182]426LFVVDWRVA HLA-B*51,HLA-Cw*0401 2
VIR015763339631417 YP 004723059.1 multidrugABCtransporterATP-bindingprotein[MycobacteriumafricanumGM041182]427FVVDWRVAL HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A24,HLA-A68.1,HLA-B*3501,HLA-B*3801,HLA-B*3902,HLA-B*51,HLA-B*5301,HLA-B*5401,HLA-B7,HLA-Cw*0301,MHC-Db revised,MHC-Kd 16
VIR015764339631417 YP 004723059.1 multidrugABCtransporterATP-bindingprotein[MycobacteriumafricanumGM041182]428VVDWRVALV HLA-A*0201,HLA-A*0205,HLA-A2,HLA-B14,HLA-B*51,HLA-B*5103 6
VIR015765339631417 YP 004723059.1 multidrugABCtransporterATP-bindingprotein[MycobacteriumafricanumGM041182]429VDWRVALVL HLA-B*3701,HLA-B40,HLA-B*51,HLA-B*5201,HLA-B*5301,HLA-B*5401,HLA-B60,HLA-B61,MHC-Kk 9
VIR015766339631417 YP 004723059.1 multidrugABCtransporterATP-bindingprotein[MycobacteriumafricanumGM041182]430DWRVALVLF HLA-Cw*0401 1
VIR015767339631417 YP 004723059.1 multidrugABCtransporterATP-bindingprotein[MycobacteriumafricanumGM041182]431WRVALVLFG HLA-B*2702,HLA-B*51,HLA-B*5401 3
VIR015769339631417 YP 004723059.1 multidrugABCtransporterATP-bindingprotein[MycobacteriumafricanumGM041182]433VALVLFGPV HLA-A*0205,HLA-B*0702,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5201,HLA-B*5301,HLA-B*5801,HLA-B61,HLA-Cw*0301 11
VIR015770339631417 YP 004723059.1 multidrugABCtransporterATP-bindingprotein[MycobacteriumafricanumGM041182]434ALVLFGPVL HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-B*2705,HLA-B*3902,HLA-B62,HLA-B7,HLA-Cw*0301,HLA-Cw*0602,MHC-Db,MHC-Db revised,MHC-Kd 14
VIR015771339631417 YP 004723059.1 multidrugABCtransporterATP-bindingprotein[MycobacteriumafricanumGM041182]435LVLFGPVLV HLA-A*0201,HLA-A*0205,HLA-A68.1,HLA-B*51,HLA-B*5103,HLA-B*5301 6
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