Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to HLA prediction using CTLpred and nHLApred The second last tells us the HLA alleles to which peptide is binding. The last column counts the number of HLA alleles for that peptide.


Total number of predicted 9mer peptides are 279773 (corresponding to browse type ctl)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count) HLA Alleles HLA alleles (count)
VIR06941131793011 NP 855504.1 preproteintranslocasesubunitSecA[MycobacteriumbovisAF2122/97]665RTVTAREEL HLA-A24,HLA-B*0702,HLA-B14,HLA-B*2705,HLA-B*3501,HLA-B*3902,HLA-B40,HLA-B*5801,HLA-B60,HLA-B7,HLA-Cw*0301,MHC-Db revised,MHC-Kd 13 HLA-A2,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
VIR06941431793011 NP 855504.1 preproteintranslocasesubunitSecA[MycobacteriumbovisAF2122/97]668TAREELAEL HLA-B*3501,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5801,HLA-B60,HLA-B7,HLA-B8,HLA-Cw*0401,MHC-Db revised 10 HLA-A2,HLA-A*0203,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR06941531793011 NP 855504.1 preproteintranslocasesubunitSecA[MycobacteriumbovisAF2122/97]669AREELAELA HLA-B*2702,HLA-B*2705 2 HLA-A2,HLA-B*5301,HLA-B*5401,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301 13
VIR06942231793011 NP 855504.1 preproteintranslocasesubunitSecA[MycobacteriumbovisAF2122/97]676LAPKRYEEL HLA-A24,HLA-B14,HLA-B*3501,HLA-B*3902,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5801,HLA-B60,HLA-B7,HLA-B8,HLA-Cw*0301,MHC-Dd,MHC-Kb 15 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*6802 10
VIR06942531793011 NP 855504.1 preproteintranslocasesubunitSecA[MycobacteriumbovisAF2122/97]679KRYEELSDK HLA-A3,HLA-B*2702,HLA-B*2705 3 HLA-A2,HLA-A*0203,HLA-B27,HLA-B*5301,HLA-B7,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 14
VIR06943431793011 NP 855504.1 preproteintranslocasesubunitSecA[MycobacteriumbovisAF2122/97]688VSEERLETI HLA-A1,HLA-B*3801,HLA-B*3901,HLA-B*51,HLA-B*5101,HLA-B*5103,HLA-B*5801,MHC-Dd,MHC-Kk 9 HLA-A*1101,HLA-A11,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*6801,HLA-A*6802 13
VIR06943831793011 NP 855504.1 preproteintranslocasesubunitSecA[MycobacteriumbovisAF2122/97]692RLETICRQI HLA-A1,HLA-A2.1,HLA-B*0702,HLA-B*3701,MHC-Kk 5 HLA-A3,HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR06944031793011 NP 855504.1 preproteintranslocasesubunitSecA[MycobacteriumbovisAF2122/97]694ETICRQIML HLA-A68.1,HLA-B14,HLA-B*3701,HLA-B*3902,HLA-B40,HLA-B*5301,HLA-B60,HLA-B7,HLA-B8,HLA-Cw*0301,MHC-Dd,MHC-Kd 12 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301,HLA-A*6801 11
VIR06944131793011 NP 855504.1 preproteintranslocasesubunitSecA[MycobacteriumbovisAF2122/97]695TICRQIMLY HLA-A3,HLA-B*3501,HLA-B62,HLA-Cw*0702 4 HLA-A1,HLA-B14,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01,HLA-B*2703 13
VIR06944331793011 NP 855504.1 preproteintranslocasesubunitSecA[MycobacteriumbovisAF2122/97]697CRQIMLYHL HLA-B14,HLA-B*2702,HLA-B*2705,HLA-B*3901,HLA-B*3902,HLA-Cw*0602,HLA-Cw*0702,MHC-Dd 8 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01 10
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