Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to MHC class I prediction using Propred1. The second last tells us the MHC class I alleles to which peptide is binding. The last column counts the number of MHC class I alleles for that peptide.


Total number of predicted 9mer peptides are 1228129 (corresponding to browse type mhcI)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count)
VIR014351339631358 YP 004723000.1 hypotheticalproteinMAF 13110[MycobacteriumafricanumGM041182]41ARGWVHAYS HLA-B*2702,HLA-B*2705 2
VIR014352339631358 YP 004723000.1 hypotheticalproteinMAF 13110[MycobacteriumafricanumGM041182]42RGWVHAYSV HLA-A*0201,HLA-A2,HLA-B*0702,HLA-B*2705,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5201,HLA-B*5401,HLA-B61,MHC-Dd 11
VIR014353339631358 YP 004723000.1 hypotheticalproteinMAF 13110[MycobacteriumafricanumGM041182]43GWVHAYSVT MHC-Kb 1
VIR014354339631358 YP 004723000.1 hypotheticalproteinMAF 13110[MycobacteriumafricanumGM041182]44WVHAYSVTA HLA-A*0205,HLA-A2,HLA-B*0702,HLA-B*51,HLA-B*5301,HLA-B*5401 6
VIR014355339631358 YP 004723000.1 hypotheticalproteinMAF 13110[MycobacteriumafricanumGM041182]45VHAYSVTAT HLA-B*3801 1
VIR014356339631358 YP 004723000.1 hypotheticalproteinMAF 13110[MycobacteriumafricanumGM041182]46HAYSVTATS HLA-B*5101,HLA-B*5102,HLA-B*5103 3
VIR014357339631358 YP 004723000.1 hypotheticalproteinMAF 13110[MycobacteriumafricanumGM041182]47AYSVTATSM HLA-A24,HLA-Cw*0401,MHC-Kd 3
VIR014358339631358 YP 004723000.1 hypotheticalproteinMAF 13110[MycobacteriumafricanumGM041182]48YSVTATSML HLA-A2.1,HLA-B*3501,HLA-B*3701,HLA-B*3902,HLA-B40,HLA-B*51,HLA-B*5301,HLA-B*5401,HLA-B*5801,HLA-B60,HLA-B7,HLA-Cw*0301,MHC-Db,MHC-Db revised,MHC-Kb,MHC-Kd,MHC-Ld 17
VIR014360339631358 YP 004723000.1 hypotheticalproteinMAF 13110[MycobacteriumafricanumGM041182]50VTATSMLNR HLA-A1,HLA-A*1101,HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1 7
VIR014361339631358 YP 004723000.1 hypotheticalproteinMAF 13110[MycobacteriumafricanumGM041182]51TATSMLNRR HLA-A20 Cattle,HLA-A*3101,HLA-A*3302,HLA-A68.1 4
Showing 1 to 10 of 1,000 entries