Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to HLA prediction using CTLpred and nHLApred The second last tells us the HLA alleles to which peptide is binding. The last column counts the number of HLA alleles for that peptide.


Total number of predicted 9mer peptides are 279773 (corresponding to browse type ctl)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count) HLA Alleles HLA alleles (count)
VIR06241531792713 NP 855206.1 polyketidesynthase[MycobacteriumbovisAF2122/97]2070VEAETGIRI HLA-B*3701,HLA-B40,HLA-B*4403,HLA-B*51,HLA-B60,HLA-B61,MHC-Kk 7 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*6801 10
VIR06242731792713 NP 855206.1 polyketidesynthase[MycobacteriumbovisAF2122/97]2082EINTTVRGL HLA-A*3302,HLA-B14,HLA-B*3902,HLA-B7,HLA-Cw*0401 5 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01 10
VIR06243031792713 NP 855206.1 polyketidesynthase[MycobacteriumbovisAF2122/97]2085TTVRGLADL HLA-B14,HLA-B*3901,HLA-B*3902,HLA-B40,HLA-B*5801,HLA-B60,HLA-B7,HLA-Cw*0301,HLA-Cw*0401,MHC-Db,MHC-Db revised,MHC-Kd 12 HLA-A2,HLA-A*0206,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR06243431792713 NP 855206.1 polyketidesynthase[MycobacteriumbovisAF2122/97]2089GLADLMCDK HLA-A*1101,HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A68.1,HLA-B*2705 6 HLA-A2,HLA-A*0201,HLA-A*0202,HLA-A24,HLA-A2.1,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 14
VIR06247031792725 NP 855218.1 lipoproteinsignalpeptidase[MycobacteriumbovisAF2122/97]25NAPAPPRRL HLA-B*3501,HLA-B*3902,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5801,HLA-B60,HLA-B7,HLA-B8,MHC-Db,MHC-Dd,MHC-Kb 12 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01 10
VIR06247131792725 NP 855218.1 lipoproteinsignalpeptidase[MycobacteriumbovisAF2122/97]26APAPPRRLR HLA-A20 Cattle,HLA-A*3302,HLA-A68.1 3 HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
VIR06247331792725 NP 855218.1 lipoproteinsignalpeptidase[MycobacteriumbovisAF2122/97]28APPRRLRML HLA-B*0702,HLA-B14,HLA-B*3501,HLA-B*3701,HLA-B*3801,HLA-B*3902,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5301,HLA-B*5401,HLA-B60,HLA-B7,HLA-B8,HLA-Cw*0401,HLA-Cw*0602,MHC-Dd,MHC-Kb,MHC-Ld 20 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR06247631792725 NP 855218.1 lipoproteinsignalpeptidase[MycobacteriumbovisAF2122/97]31RRLRMLLSV HLA-B*0702,HLA-B14,HLA-B*2702,HLA-B*2705,HLA-B*3901,HLA-B*5401,HLA-Cw*0602 7 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*6802 10
VIR06247931792725 NP 855218.1 lipoproteinsignalpeptidase[MycobacteriumbovisAF2122/97]34RMLLSVAVV HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-A*3101,HLA-B*0702,HLA-B*2702,HLA-B*2705,HLA-B*5103,HLA-B*5201 11 HLA-B*5301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301 11
VIR06248031792725 NP 855218.1 lipoproteinsignalpeptidase[MycobacteriumbovisAF2122/97]35MLLSVAVVV HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-B*51,HLA-B*5103,HLA-B*5201,HLA-B*5301,HLA-B*5401,HLA-B62 11 HLA-A*0206,HLA-A2.1,HLA-B*51,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 12
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