Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interferon-gamma inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IFNepitope server with ninth column present the alogirithm of IFNepitope program. The last column display the score of peptides from IFNepitope server.


Total number of predicted 9mer peptides are 108182 (corresponding to browse type th1)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IFN-gamma inducing algorithmIFN-gamma inducing Score
SEC13107031795053 NP 857546.1 hypothetica522YGFFWITAV DRB1_0405, DRB1_0408, DRB1_0813, DRB1_1120, DRB1_1302, DRB1_1501, DRB1_1502, DRB1_1506 8 SVM 0.32
SEC13107231795053 NP 857546.1 hypothetica524FFWITAVTT DRB1_0101, DRB1_0102 2 SVM 0.39
SEC13107331795053 NP 857546.1 hypothetica525FWITAVTTD DRB1_0405, DRB1_0421 2 SVM 0.41
SEC13107431795053 NP 857546.1 hypothetica526WITAVTTDG DRB1_0401, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0421, DRB1_0426 6 SVM 0.22
SEC13110631795053 NP 857546.1 hypothetica558YLASADHAI DRB1_0701, DRB1_0703 2 SVM 0.14
SEC13113031795053 NP 857546.1 hypothetica582VQAWAAFHD DRB1_1304 1 SVM 0.02
SEC13113331795053 NP 857546.1 hypothetica585WAAFHDMTL DRB1_1502, DRB1_1506 2 SVM 0.00
SEC13113931795053 NP 857546.1 hypothetica591MTLRAVIGT DRB1_0402, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0813, DRB1_0817 7 SVM 0.69
SEC13114131795053 NP 857546.1 hypothetica593LRAVIGTAE DRB1_0410 1 SVM 0.94
SEC13124031795053 NP 857546.1 hypothetica692LRAFRAYAA DRB1_0101, DRB1_0102, DRB1_0402, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0423, DRB1_0804, DRB1_1101, DRB1_1102, DRB1_1104, DRB1_1106, DRB1_1114, DRB1_1121, DRB1_1301, DRB1_1304, DRB1_1311, DRB1_1322, DRB1_1323, DRB1_1327, DRB1_1328, DRB1_1501, DRB1_1502, DRB1_1506 25 SVM 0.84
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