Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last five columns present the fields related to MHC class II prediction using Propred followed by prediction of interferon-gamma inducing peptides. The sixth column tells us the MHC class II alleles to which peptide is binding. The seventh column counts the number of MHC class II alleles for that peptide. The eighth column depicts the prediction result of IFNepitope server with ninth column present the alogirithm of IFNepitope program. The last column display the score of peptides from IFNepitope server.


Total number of predicted 9mer peptides are 108182 (corresponding to browse type th1)



ID gene IDProtein DetailPositionSequence (9mer)MHC class II Alleles MHC class II alleles (count) IFN-gamma inducing algorithmIFN-gamma inducing Score
SEC109573383309581 YP 005362392.1 hypothe155FYAATRIGI DRB1_0101, DRB1_0305, DRB1_0309, DRB1_0701, DRB1_0703, DRB1_1101, DRB1_1128, DRB1_1305, DRB1_1307, DRB1_1321, DRB1_1502, DRB1_1506 12 MERCI 0.99
SEC109579383309581 YP 005362392.1 hypothe161IGIGDQPAV DRB1_0301, DRB1_1107 2 SVM 0.41
SEC109595383309581 YP 005362392.1 hypothe177VGGELAAAS DRB1_0401, DRB1_0421, DRB1_0426 3 SVM 0.35
SEC109617383309581 YP 005362392.1 hypothe199WVVKFLRTH DRB1_0402, DRB1_0801, DRB1_0802, DRB1_0804, DRB1_0806, DRB1_0813, DRB1_0817, DRB1_1101, DRB1_1102, DRB1_1114, DRB1_1120, DRB1_1121, DRB1_1301, DRB1_1302, DRB1_1304, DRB1_1307, DRB1_1321, DRB1_1322, DRB1_1323, DRB1_1327, DRB1_1328 21 SVM 0.42
SEC109618383309581 YP 005362392.1 hypothe200VVKFLRTHG DRB1_0813, DRB1_1102, DRB1_1120, DRB1_1121, DRB1_1301, DRB1_1302, DRB1_1304, DRB1_1322, DRB1_1327, DRB1_1328, DRB1_1501, DRB1_1502, DRB1_1506 13 MERCI 0.99
SEC109619383309581 YP 005362392.1 hypothe201VKFLRTHGL DRB1_0101, DRB1_0102, DRB1_0401, DRB1_0402, DRB1_0404, DRB1_0405, DRB1_0408, DRB1_0410, DRB1_0421, DRB1_0423, DRB1_0426, DRB1_0701, DRB1_0703, DRB1_0806, DRB1_1101, DRB1_1102, DRB1_1104, DRB1_1106, DRB1_1114, DRB1_1120, DRB1_1121, DRB1_1128, DRB1_1301, DRB1_1302, DRB1_1304, DRB1_1305, DRB1_1307, DRB1_1311, DRB1_1321, DRB1_1322, DRB1_1323, DRB1_1327, DRB1_1328, DRB1_1501, DRB1_1506, DRB5_0101, DRB5_0105 37 SVM 0.64
SEC109621383309581 YP 005362392.1 hypothe203FLRTHGLIH DRB1_0401, DRB1_0426, DRB1_0701, DRB1_0703, DRB1_0817, DRB1_1101, DRB1_1321, DRB5_0101, DRB5_0105 9 SVM 0.93
SEC109622383309581 YP 005362392.1 hypothe204LRTHGLIHD DRB1_1301, DRB1_1304, DRB1_1321, DRB1_1327, DRB1_1328, DRB1_1506 6 SVM 0.46
SEC109635383309581 YP 005362392.1 hypothe217LQLRTFPTI DRB1_0804, DRB1_1506 2 SVM 0.15
SEC109645383309581 YP 005362392.1 hypothe227IGGDLAGAA DRB1_0301, DRB1_0305, DRB1_1107 3 SVM 0.02
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