Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to MHC class I prediction using Propred1. The second last tells us the MHC class I alleles to which peptide is binding. The last column counts the number of MHC class I alleles for that peptide.


Total number of predicted 9mer peptides are 1228129 (corresponding to browse type mhcI)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count)
VIR012866339631044 YP 004722686.1 transcriptionalregulator[MycobacteriumafricanumGM041182]153ISLTRTEFA HLA-B*51,HLA-B*5301,HLA-B*5801 3
VIR012867339631044 YP 004722686.1 transcriptionalregulator[MycobacteriumafricanumGM041182]154SLTRTEFAL HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-B*2705,HLA-B*3902,HLA-B7 8
VIR012868339631044 YP 004722686.1 transcriptionalregulator[MycobacteriumafricanumGM041182]155LTRTEFALL HLA-A2.1,HLA-B*3501,HLA-B*3701,HLA-B*51,HLA-B*5301,HLA-B*5801,HLA-B60,HLA-B7,HLA-B8,MHC-Kb 10
VIR012869339631044 YP 004722686.1 transcriptionalregulator[MycobacteriumafricanumGM041182]156TRTEFALLE HLA-B*2702 1
VIR012870339631044 YP 004722686.1 transcriptionalregulator[MycobacteriumafricanumGM041182]157RTEFALLEM HLA-A1,HLA-B*0702,HLA-B*5801 3
VIR012871339631044 YP 004722686.1 transcriptionalregulator[MycobacteriumafricanumGM041182]158TEFALLEML HLA-A*0205,HLA-A2,HLA-B*2702,HLA-B*2705,HLA-B*3701,HLA-B40,HLA-B*4403,HLA-B*5201,HLA-B*5401,HLA-B60,HLA-B61,HLA-Cw*0602,MHC-Kb,MHC-Kk 14
VIR012872339631044 YP 004722686.1 transcriptionalregulator[MycobacteriumafricanumGM041182]159EFALLEMLI HLA-B*3701,HLA-B*5101,HLA-Cw*0401,MHC-Kd,MHC-Kk 5
VIR012873339631044 YP 004722686.1 transcriptionalregulator[MycobacteriumafricanumGM041182]160FALLEMLIA HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5301,HLA-B*5401,HLA-B*5801 7
VIR012877339631044 YP 004722686.1 transcriptionalregulator[MycobacteriumafricanumGM041182]164EMLIANPRR HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1 5
VIR012878339631044 YP 004722686.1 transcriptionalregulator[MycobacteriumafricanumGM041182]165MLIANPRRV HLA-A*0201,HLA-A2,HLA-A2.1,HLA-B*51,HLA-B*5102,HLA-B62,MHC-Db 7
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