Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to HLA prediction using CTLpred and nHLApred The second last tells us the HLA alleles to which peptide is binding. The last column counts the number of HLA alleles for that peptide.


Total number of predicted 9mer peptides are 279773 (corresponding to browse type ctl)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count) HLA Alleles HLA alleles (count)
VIR05601831792158 NP 854651.1 metalcationtransporterP-typeATPaseCtpV[MycobacteriumbovisAF2122/97]137WLPRVWLAL HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A24,HLA-A3,HLA-B*2705,HLA-B*3701,HLA-B*3902,HLA-B*51,HLA-B*5301,HLA-B*5401,HLA-B62,HLA-B7,MHC-Dd,MHC-Kb 16 HLA-A2,HLA-A*0201,HLA-A*0301,HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01 14
VIR05602531792158 NP 854651.1 metalcationtransporterP-typeATPaseCtpV[MycobacteriumbovisAF2122/97]144ALPLGLLAL HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-B14,HLA-B*2705,HLA-B*3902,HLA-B62,HLA-B7,HLA-Cw*0401,MHC-Db,MHC-Dd,MHC-Kb,MHC-Ld 15 HLA-A2,HLA-A*0301,HLA-B*3501,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01 13
VIR05604131792158 NP 854651.1 metalcationtransporterP-typeATPaseCtpV[MycobacteriumbovisAF2122/97]160AYPWAGWLA HLA-A24,HLA-Cw*0401 2 HLA-A1,HLA-A*2402,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 11
VIR05604231792158 NP 854651.1 metalcationtransporterP-typeATPaseCtpV[MycobacteriumbovisAF2122/97]161YPWAGWLAF HLA-B*0702,HLA-B*2702,HLA-B*2705,HLA-B*3501,HLA-B*3801,HLA-B*51,HLA-B*5101,HLA-B*5102,HLA-B*5201,HLA-B*5301,HLA-B*5401,HLA-B*5801,HLA-B62,HLA-Cw*0401,HLA-Cw*0702,MHC-Ld 16 HLA-A*0301,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 10
VIR05605131792158 NP 854651.1 metalcationtransporterP-typeATPaseCtpV[MycobacteriumbovisAF2122/97]170AATLPVQFV HLA-A*0201,HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5801,HLA-B61 6 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR05605231792158 NP 854651.1 metalcationtransporterP-typeATPaseCtpV[MycobacteriumbovisAF2122/97]171ATLPVQFVA HLA-A1,HLA-A2,HLA-B40,HLA-B*4403,HLA-B*5801 5 HLA-A*0206,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*3301 11
VIR05605831792158 NP 854651.1 metalcationtransporterP-typeATPaseCtpV[MycobacteriumbovisAF2122/97]177FVAGWPILR HLA-A*1101,HLA-A20 Cattle,HLA-A3,HLA-A*3101,HLA-A*3302,HLA-A68.1,HLA-B*51,HLA-B*5401 8 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR05607431792158 NP 854651.1 metalcationtransporterP-typeATPaseCtpV[MycobacteriumbovisAF2122/97]193ALTSNMDTL HLA-A*0201,HLA-A*0205,HLA-A2,HLA-A2.1,HLA-A3,HLA-B*2705,HLA-B*3902,HLA-B62,HLA-B7,MHC-Db,MHC-Db revised 11 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01 9
VIR05607731792158 NP 854651.1 metalcationtransporterP-typeATPaseCtpV[MycobacteriumbovisAF2122/97]196SNMDTLIAL HLA-A*0201,HLA-A*0205,HLA-A24,HLA-B14,HLA-B*3501,HLA-B*3801,HLA-B*3901,HLA-B*3902,HLA-B60,HLA-B7,HLA-Cw*0301,HLA-Cw*0401,MHC-Db revised,MHC-Kb,MHC-Kd 15 HLA-B*3501,HLA-B*0702,HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,HLA-B35,Mamu-A*01 12
VIR05608331792158 NP 854651.1 metalcationtransporterP-typeATPaseCtpV[MycobacteriumbovisAF2122/97]202IALGTLTAF HLA-B*3501,HLA-B*3801,HLA-B*4403,HLA-B*51,HLA-B*5801,HLA-B62,HLA-Cw*0301,MHC-Ld 8 HLA-Cw*0401,H2-Db,H2-Dd,H2-Kb,H2-Kd,H2-Ld,HLA-G,H-2Qa,Mamu-A*01,HLA-A*6802 10
Showing 1 to 10 of 1,000 entries