On this page, we have enlisted other computational tools and resources developed for designing cancer immunotherapy. The given table comprises genome profile repositories. The first column represents the Name of the database, and the rest of the columns represents the Year, Description, Reference, and working status of the database. Click on the headers to sort them accordingly.
| Name | Year | Description | Reference | Functional |
|---|---|---|---|---|
| Prognoscan | 2009 | A new database for meta-analysis of the prognostic value of genes | NO | |
| Circ2Traits | 2013 | A database maintaining 1,951 circular RNA potentially associated with 105 different diseases including cancer and traits. | NO | |
| SCUDO | 2015 | A tool for signature-based clustering of expression profiles | YES | |
| CircNet | 2016 | A database of circular RNAs derived from transcriptome sequencing data | NO | |
| ExoRBase | 2018 | A database of circRNA, lncRNA and mRNA in human blood exosomes | YES | |
| Circ2Disesase | 2018 | A manually curated database of experimentally validated circRNAs in human disease | YES | |
| LncRNADisease 2.0 | 2019 | The LncRNADisease v2.0 hosts disease associated LncRNAs and CircRNAs. | YES | |
| OvirusTdb | 2020 | A database of oncolytic viruses for the advancement of therapeutics in cancer | YES | |
| GWAS | 2007 | A catalog of human genome-wide association studies | YES | |
| CancerDR | 2013 | Cancer drug resistance database | YES | |
| CancerPPD | 2015 | A repository of experimentally verified anticancer peptides (ACPs) and anticancer proteins. | YES | |
| CancerPDF | 2017 | A manually curated database of cancer-associated peptides found in different human bodyfluids (e.g., serum, saliva, etc) | YES | |
| GSAlign | 2020 | An efficient sequence alignment tool for intra-species genomes | YES | |
| AVID | 2003 | AVID finds maximal matches between two sequences using a suffix tree structure | NO | |
| BBBWT | 2009 | BBBWT only finds all bi-unique k-mers in common between two genomes | YES | |
| BLAT | 2002 | BLAT rapidly scans for relatively short matches and extends those into high-scoring pairs | YES | |
| Cgaln | 2010 | Fast and space-efficient whole-genome alignment tool | YES | |
| Harvest | 2014 | Harvest identifies maximal unique matches (MUMs) and uses MUMs to recruit similar genomes and anchor the multiple alignment. | YES | |
| VISTA | 2004 | Computational tools for comparative genomics | YES | |
| LAST | 2011 | LAST uses adaptive seeds to increase both alignment sensitivity and speed for large sequence comparison. | YES | |
| MashMap | 2018 | A fast adaptive algorithm for computing whole-genome homology maps | YES | |
| SAMmate | 2011 | A GUI tool for processing short read alignments in SAM/BAM format | YES | |
| Samtools | 2009 | Sequence Alignment/Map Format Specification | YES |
ImmCancer: This website is maintained and developed at Raghava's Lab