Cancer Specific Biomarker Tools



Welcome to Cancer Specific Biomarker Tools Page of ImmCancer

On this page, we have enlisted in-silico tools developed for predicting cancer biomarkers, which may be further used for designing cancer immunotherapy. The given table comprises genome profile repositories. The first column represents the Name of the database, and the rest of the columns represents the Year, Description, Reference, and working status of the database. Click on the headers to sort them accordingly.


NameYearDescriptionReferenceFunctional
PrognoScan2009Database for meta-analysis of the prognostic value of genesNO
PROGmiR2012Tool for identifying prognostic miRNA biomarkers in multiple cancers using publicly available dataYES
PROGgene2013Gene expression based survival analysis web application for multiple cancersYES
SurvExpress2013Online biomarker validation tool and database for cancer gene expression data using survival analysisYES
CancerDR2013Cancer drug resistance databaseYES
SurvMicro2014Web tool that assesses miRNA signatures from publicly available miRNA profiles using multivariate survival analysisYES
OncoLnC2016Tool for interactively exploring survival correlations, and for downloading clinical data YES
CancerDP2016Predicting priority/potency of an anticancer drug against a cancer cell line using its genomic featuresYES
CancerTOPE2016Platform for designing genome-based personalized immunotherapy or vaccine against cancerYES
CancerCSP2017Predicting early and late stages of clear cell renal cell carcinoma based on genomics expression dataYES
GSCAlite2018Web server for gene set cancer analysisYES
TRGAted2018Web tool for survival analysis using protein data in TCGAYES
CancerLSP2019Predicts the early and late stage of liver cancer samples using transcriptomics and epigenomics biomarkers YES
CancerSPP2019Prediction and Analysis of skin cancer progression using genomics profilesYES
BBcancer2019Expression atlas of blood-based biomarkers in the early diagnosis of cancersYES
CRCRpred2019Predict the risk scores of colorectal cancer patientsYES
OSblca2019Webserver to investigate prognostic biomarkers of bladder cancer patientsYES
CaPSSA2019Visual evaluation of cancer biomarker genes for patient stratification and survival analysis using mutation and expression dataYES
MEXPRESS2019Tool for the integration and visualization of gene expression, DNA methylation and clinical data from TCGAYES
TCPAv3.02019Integrative platform to explore the pan-cancer analysis of functional proteomic dataYES
HCCPred2020Predict and differentiate the liver hepatocellular carcinoma and normal liver samplesYES
CancerTSP2020Classify the early and late-stage samples of thyroid carcinoma using RNA expression profilesYES
OSluca2020Web Server to evaluate prognostic biomarkers for lung cancerYES
SKCMhrp2020Classify high risk and low risk skin cutaneous melanoma patients from their HLA-superalleleYES
CMcrpred2020Estimate survival risk in cutaneous melanoma patients based on the clinically measured features YES
SCLC- CellMiner2020Resource for small cell lung cancer cell Line genomics and pharmacology YES