| MGnify |
The platform provides access to taxonomic assignments and functional annotations for nearly half a million analyses covering metabarcoding, metatranscriptomic, and metagenomic datasets, which are derived from a wide range of different environments. |
36477304 |
| MG-RAST |
An open source, open submission web application server that suggests automatic phylogenetic and functional analysis of metagenomes. |
18803844 |
| IMG/M |
It provide support for users to perform comparative analysis of isolate and single cell genomes, metagenomes, and metatranscriptomes. |
36382399 |
| PhaBOX |
A web server for identifying and characterizing phage contigs in metagenomic data. |
37641717 |
| EasyMap |
A user-friendly online platform for analyzing 16S ribosomal DNA sequencing data. |
33711505 |
| MaGe |
A microbial genome annotation system based on a relational database containing information on bacterial genomes, as well as a web interface to achieve genome annotation projects. |
16407324 |
| Single-cell omics |
A single-cell RNA-sequencing training and analysis suite using the Galaxy framework. |
33079170 |
| MicrobiomeAnalyst 2.0 |
It supports comprehensive statistics, visualization, functional interpretation, and integrative analysis of data outputs commonly generated from microbiome studies. |
37166960 |
| EzMAP |
A standalone package providing graphical user interface, enabling easy access to all the functionalities of QIIME2 (Quantitative Insights Into Microbial Ecology) as well as streamlined downstream analyses using QIIME2 output as input. |
33827413 |
| M2IA |
M2IA streamlines the integrative data analysis between metabolome and microbiome, from data preprocessing, univariate and multivariate statistical analyses, advanced functional analysis for biological interpretation, to a summary report. |
32176258 |
| EasyAmplicon |
An easy-to-use, open-source, reproducible, and community-based pipeline for amplicon data analysis in microbiome research. |
38868346 |
| Galaxy |
An open source, web-based platform for data intensive biomedical research. |
38769056 |