| MaxBin |
An automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm. |
25136443 |
| MetaBat |
An efficient tool for accurately reconstructing single genomes from complex microbial communities. |
26336640 |
| Groopm |
An automated tool for the recovery of population genomes from related metagenomes. |
25289188 |
| CONCOCT |
Clustering contigs of metagenomes using sequence composition and coverage. |
25218180 |
| MyCC |
Metagenomic binning with coverage and composition. |
27067514 |
| MetaWatt |
The binning of metagenomic contigs for microbial physiology of mixed cultures. |
23227024 |
| BMC3C |
Binning metagenomic contigs using codon usage, sequence composition, and read coverage. |
29947757 |
| Binsanity |
Unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation. |
28289564 |
| Autometa |
Automated extraction of microbial genomes from individual shotgun metagenomes. |
30838416 |
| COCACOLA |
Binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment, and paired-end read LinkAge. |
27256312 |
| SolidBin-naive |
Improving metagenome binning with semi-supervised normalized cut. |
30977806 |
| Vamb |
Improved metagenome binning and assembly using deep variational autoencoders. |
33398153 |
| DAS Tool |
Recovery of genomes from metagenomes via a dereplication, aggregation, and scoring strategy. |
29807988 |
| Binning_refiner |
Improving genome bins through the combination of different binning programs. |
28186226 |
| HiCBin |
Binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps |
35227283 |
| SemiBin |
A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments |
35484115 |
| MetaWRAP |
A flexible pipeline for genome-resolved metagenomic data analysis |
30219103 |