| MetaLab |
A fully automated software platform providing an integrated data-processing pipeline for metaproteomics, including protein identification, quantification, and taxonomic profiling. |
29197424 |
| MetaNovo |
An open-source pipeline that integrates existing tools with a custom algorithm for probabilistic peptide discovery in complex metaproteomic datasets, enabling analyses without prior knowledge of sample composition. |
37327214 |
| metaprotr |
An R package providing tools for descriptive analysis of metaproteomics data, allowing clustering of peptide and protein abundances and manipulation into groups of metaproteins. |
N/A |
| MetaLab-MAG |
An extension of MetaLab designed for genome-level characterization of microbiomes from metagenome-assembled genomes, enhancing metaproteomic data analysis. |
36508259 |
| Unipept |
An open-source research tool for biodiversity analysis of metaproteomics samples, offering insights into taxonomic distributions and functional characteristics of complex ecosystems. |
38995542 |
| OpenMS |
An open-source software framework for mass spectrometry data analysis, providing tools for proteomics and metabolomics studies, including data preprocessing and visualization. |
38366242 |
| ProteoWizard |
A set of open-source, cross-platform tools and libraries for proteomics data analyses, facilitating data conversion, visualization, and analysis. |
18606607 |
| Nextflow |
A workflow management system enabling reproducible and scalable data analyses, widely adopted in bioinformatics for constructing and executing workflows. |
28398311 |
| MetaProteomeAnalyzer |
A scientific software for analyzing and visualizing metaproteomics |
32859984 |
| Prophane |
A workflow to annotate the metaproteomic search results. |
32859984 |