CoReMicrob: Computational Resources for Micorbiome

Resources for Probiotic microbe prediction in metagenomic data

Resource Name Description PubMed ID
metaProbiotics A tool for mining probiotics from metagenomic binning data based on a language model. 38487846
ProbioMinServer An integrated platform for assessing the safety and functional properties of potential probiotic strains. 37928343
APD Accurate and strict identification of probiotic species based on coverage of whole-metagenome shotgun sequencing data. 31440213
iProbiotics A machine learning platform for rapid identification of probiotic properties from whole-genome primary sequences. 34849572
PROBIO Database and bioinformatics studies of probiotics. 28727425
IPDB: Integrated Probiotic DataBase A genomic compendium of bifidobacterial health-promoting strains. 38045645
Probio-ichnos A database of microorganisms with in vitro probiotic properties. 39458265
ProbResist A database for drug-resistant probiotic bacteria. 35962763
ProBioQuest A database and semantic analysis engine for literature, clinical trials and patents related to probiotics 37697152