This page provides information regarding major tools used for biomarker analysis in metagenomic data.
| Tool Name | Description | PubMed ID |
|---|---|---|
| LEfSe | Identifies differentially abundant taxa with effect size estimation. | 21702898 |
| ANCOM-BC | Corrects compositional bias in differential abundance testing. | 32665548 |
| MaAsLin2 | Multivariable association discovery in meta-omics studies. | 34784344 |
| MetaboAnalyst | Statistical analysis and biomarker discovery in metabolomics data. | 38693118 |
| DIABLO | Multi-omics framework for biomarker discovery. | 30657866 |
| MINT | Identifies biomarkers by linking metagenomics with clinical data. | 28241739 |
| microBiomeGSM | Identification of taxonomic biomarkers from metagenomic data using G-S-M approach. | 38075911 |
| M2IA | A web server for microbiome and metabolome integrative analysis. | 32176258 |