| phyloFlash |
Rapid Small-Subunit rRNA profiling and targeted assembly from metagenome. |
33109753 |
| Kraken2 |
Ultrafast and accurate 16S rRNA microbial community analysis tool. |
32859275 |
| 16S Classifier |
A tool for fast and accurate taxonomic classification of 16S rRNA hypervariable regions in metagenomic datasets. |
25646627 |
| EzBioCloud |
A genome-driven database and platform for microbiome identification and discovery. |
38888585 |
| SPINGO |
A rapid species-classifier for microbial amplicon sequences. |
26450747 |
| Sintax |
A simple non-Bayesian taxonomy classifier for 16S and ITS sequences. |
bioRxiv |
| Vsearch |
The tools for OTU clustering, diversity analyses, and taxonomic assignment. |
27781170 |
| MOCHI |
These analyses make use of 16S/18S rRNA gene sequencing to identify taxa and predict species diversity. |
35876544 |
| PM-profiler |
A high-resolution and fast tool for taxonomy annotation of amplicon-based microbiome data. |
38912828 |
| LotuS2 |
An ultrafast and highly accurate tool for amplicon sequencing analysis. |
36258257 |
| RDP Classifier |
A machine learning-based approach for taxonomic classification of 16S and 26S sequencing data. |
38436268 |
| FungiLT |
A deep learning approach for species-level taxonomic classification of fungal ITS sequences. |
MDPI |
| Hitac |
A hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2. |
38956506 |