Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055365 19 665 NP_775834 16 5631 XP_006715090 16 5631 XP_006715089 16 5631 XP_006715088 16 5631 XP_005249008 16 5631 NP_000480 16 7355 NP_612114 16 7355 NP_001127922 16 7355 NP_690877 16 7355 XP_006724730 16 7355 XP_005262214 16 7355 XP_005262213 16 7355 XP_006724729 16 7355 XP_005262212 16 7355 XP_005262211 16 7355 XP_005262210 16 7355 NP_054859 15 9605 NP_001120679 15 9605 NP_037506 15 9605 NP_954635 15 9605 NP_001155901 15 9605 NP_056161 15 9605 NP_001159396 15 9605 NP_000679 15 9605 NP_004089 15 9605 NP_056234 15 9605 XP_005274542 15 9605 XP_006720156 15 9605 XP_005265002 15 9605 XP_005265001 15 9605 XP_006712620 15 9605 XP_005246688 15 9605 XP_005246689 15 9605 XP_005264260 15 9605 NP_004088 15 9605>NP_055365 Length = 1032 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 YSQSLI KD Sbjct: 409 YSQSLIEKD 417>NP_775834 Length = 508 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SQSLIAKD 9 S SLIAKD Sbjct: 492 SPSLIAKD 499>XP_006715090 Length = 352 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SQSLIAKD 9 S SLIAKD Sbjct: 336 SPSLIAKD 343>XP_006715089 Length = 445 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SQSLIAKD 9 S SLIAKD Sbjct: 429 SPSLIAKD 436>XP_006715088 Length = 445 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SQSLIAKD 9 S SLIAKD Sbjct: 429 SPSLIAKD 436>XP_005249008 Length = 499 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SQSLIAKD 9 S SLIAKD Sbjct: 483 SPSLIAKD 490>NP_000480 Length = 2492 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 +SQSLI+ D Sbjct: 2040 FSQSLISLD 2048>NP_612114 Length = 2454 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 +SQSLI+ D Sbjct: 2002 FSQSLISLD 2010>NP_001127922 Length = 435 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SQSLIAKD 9 S SL+AKD Sbjct: 50 SASLVAKD 57>NP_690877 Length = 423 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SQSLIAKD 9 S SL+AKD Sbjct: 50 SASLVAKD 57>XP_006724730 Length = 2399 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 +SQSLI+ D Sbjct: 1947 FSQSLISLD 1955>XP_005262214 Length = 2424 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 +SQSLI+ D Sbjct: 1972 FSQSLISLD 1980>XP_005262213 Length = 2437 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 +SQSLI+ D Sbjct: 1985 FSQSLISLD 1993>XP_006724729 Length = 2453 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 +SQSLI+ D Sbjct: 2001 FSQSLISLD 2009>XP_005262212 Length = 2453 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 +SQSLI+ D Sbjct: 2001 FSQSLISLD 2009>XP_005262211 Length = 2463 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 +SQSLI+ D Sbjct: 2011 FSQSLISLD 2019>XP_005262210 Length = 2491 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 +SQSLI+ D Sbjct: 2039 FSQSLISLD 2047>NP_054859 Length = 954 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YSQSLIA 7 YSQ LIA Sbjct: 349 YSQDLIA 355>NP_001120679 Length = 954 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YSQSLIA 7 YSQ LIA Sbjct: 349 YSQDLIA 355>NP_037506 Length = 868 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YSQSLIAK 8 Y QS++AK Sbjct: 258 YHQSILAK 265>NP_954635 Length = 640 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 YSQSLIAK 8 YS SLI K Sbjct: 235 YSDSLITK 242>NP_001155901 Length = 873 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YSQSLIAK 8 Y QS++AK Sbjct: 263 YHQSILAK 270>NP_056161 Length = 2539 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 + +SL+A+D Sbjct: 1417 FEESLVARD 1425>NP_001159396 Length = 169 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QSLIAKD 9 +SL+AKD Sbjct: 13 ESLVAKD 19>NP_000679 Length = 640 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 YSQSLIAK 8 YS SLI K Sbjct: 235 YSDSLITK 242>NP_004089 Length = 252 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QSLIAKD 9 +SL+AKD Sbjct: 13 ESLVAKD 19>NP_056234 Length = 2828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YSQSLIAKD 9 YSQ++ KD Sbjct: 459 YSQTISTKD 467>XP_005274542 Length = 2853 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YSQSLIAKD 9 YSQ++ KD Sbjct: 484 YSQTISTKD 492>XP_006720156 Length = 2497 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 YSQSLIAKD 9 + +SL+A+D Sbjct: 1417 FEESLVARD 1425>XP_005265002 Length = 640 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 YSQSLIAK 8 YS SLI K Sbjct: 235 YSDSLITK 242>XP_005265001 Length = 657 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 YSQSLIAK 8 YS SLI K Sbjct: 252 YSDSLITK 259>XP_006712620 Length = 932 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YSQSLIA 7 YSQ LIA Sbjct: 349 YSQDLIA 355>XP_005246688 Length = 954 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YSQSLIA 7 YSQ LIA Sbjct: 349 YSQDLIA 355>XP_005246689 Length = 954 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YSQSLIA 7 YSQ LIA Sbjct: 349 YSQDLIA 355>XP_005264260 Length = 280 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QSLIAKD 9 +SL+AKD Sbjct: 46 ESLVAKD 52>NP_004088 Length = 290 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QSLIAKD 9 +SL+AKD Sbjct: 46 ESLVAKD 52Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.121 0.298 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 319,565 Number of extensions: 391 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |