Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004963 20 299 XP_005251512 20 299 NP_112598 17 2528 NP_077305 17 4312 NP_001037729 16 5631 NP_872353 16 5631 NP_059980 16 5631 NP_055230 16 5631 NP_001278220 16 7355 NP_037428 16 7355 XP_006710652 16 7355 XP_006710651 16 7355 XP_005270844 16 7355 NP_000531 15 9605 NP_001036188 15 9605 NP_002218 15 9605 NP_008870 15 9605 NP_001271260 15 9605 NP_001615 15 9605 NP_954652 15 9605 NP_001230181 15 9605 NP_079478 15 9605 NP_003128 15 9605 XP_006725233 15 9605 XP_006725232 15 9605 XP_006725231 15 9605 XP_006723382 15 9605 XP_006723381 15 9605 XP_006723380 15 9605 XP_005268078 15 9605 XP_006720285 15 9605 XP_005267988 15 9605 XP_005267987 15 9605 XP_005250608 15 9605 XP_006716161 15 9605 XP_005250607 15 9605 XP_005250606 15 9605 XP_005266896 15 9605 XP_005270898 15 9605 XP_006710687 15 9605 NP_478144 15 9605 NP_037416 15 9605>NP_004963 Length = 1132 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YSKSFFEAA 9 YS+SFFEAA Sbjct: 590 YSESFFEAA 598>XP_005251512 Length = 1132 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YSKSFFEAA 9 YS+SFFEAA Sbjct: 590 YSESFFEAA 598>NP_112598 Length = 5088 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YSKSFFEAA 9 + KSFF+AA Sbjct: 297 HKKSFFQAA 305>NP_077305 Length = 240 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SKSFFEA 8 +KSFFEA Sbjct: 190 AKSFFEA 196>NP_001037729 Length = 139 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YSKSFFEA 8 YSK +F+A Sbjct: 35 YSKCYFQA 42>NP_872353 Length = 227 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 KSFFEA 8 KSFFEA Sbjct: 218 KSFFEA 223>NP_059980 Length = 235 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 KSFFEA 8 KSFFEA Sbjct: 226 KSFFEA 231>NP_055230 Length = 1053 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 KSFFEA 8 KSFFEA Sbjct: 773 KSFFEA 778>NP_001278220 Length = 219 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 KSFFEAA 9 K FFEAA Sbjct: 100 KRFFEAA 106>NP_037428 Length = 684 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SFFEAA 9 SFFEAA Sbjct: 45 SFFEAA 50>XP_006710652 Length = 665 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SFFEAA 9 SFFEAA Sbjct: 26 SFFEAA 31>XP_006710651 Length = 684 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SFFEAA 9 SFFEAA Sbjct: 45 SFFEAA 50>XP_005270844 Length = 684 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SFFEAA 9 SFFEAA Sbjct: 45 SFFEAA 50>NP_000531 Length = 5038 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KSFFEAA 9 +SFFE+A Sbjct: 3093 RSFFESA 3099>NP_001036188 Length = 5033 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KSFFEAA 9 +SFFE+A Sbjct: 3093 RSFFESA 3099>NP_002218 Length = 1154 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKSFFEAA 9 S +FFEAA Sbjct: 632 SLAFFEAA 639>NP_008870 Length = 1332 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YSKSFFEA 8 +SKSFF + Sbjct: 1125 HSKSFFSS 1132>NP_001271260 Length = 457 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KSFFEAA 9 K+FF+AA Sbjct: 430 KTFFQAA 436>NP_001615 Length = 1723 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 5/7 (71%) Query: 1 YSKSFFE 7 Y K FFE Sbjct: 1223 YEKPFFE 1229>NP_954652 Length = 228 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 YSKSFF 6 Y KSFF Sbjct: 123 YKKSFF 128>NP_001230181 Length = 143 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SKSFFEA 8 +K+FFEA Sbjct: 92 AKNFFEA 98>NP_079478 Length = 239 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SKSFFEA 8 +K+FFEA Sbjct: 188 AKNFFEA 194>NP_003128 Length = 655 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 YSKSFF 6 YSK FF Sbjct: 586 YSKEFF 591>XP_006725233 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSKSFF 6 +SKSFF Sbjct: 490 FSKSFF 495>XP_006725232 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSKSFF 6 +SKSFF Sbjct: 490 FSKSFF 495>XP_006725231 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSKSFF 6 +SKSFF Sbjct: 490 FSKSFF 495>XP_006723382 Length = 5027 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KSFFEAA 9 +SFFE+A Sbjct: 3093 RSFFESA 3099>XP_006723381 Length = 5031 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KSFFEAA 9 +SFFE+A Sbjct: 3092 RSFFESA 3098>XP_006723380 Length = 5032 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KSFFEAA 9 +SFFE+A Sbjct: 3093 RSFFESA 3099>XP_005268078 Length = 1272 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YSKSFFEA 8 +SKSFF + Sbjct: 1065 HSKSFFSS 1072>XP_006720285 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSKSFF 6 +SKSFF Sbjct: 490 FSKSFF 495>XP_005267988 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSKSFF 6 +SKSFF Sbjct: 490 FSKSFF 495>XP_005267987 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSKSFF 6 +SKSFF Sbjct: 490 FSKSFF 495>XP_005250608 Length = 719 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 YSKSFF 6 YSK FF Sbjct: 650 YSKEFF 655>XP_006716161 Length = 719 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 YSKSFF 6 YSK FF Sbjct: 650 YSKEFF 655>XP_005250607 Length = 730 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 YSKSFF 6 YSK FF Sbjct: 661 YSKEFF 666>XP_005250606 Length = 767 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 YSKSFF 6 YSK FF Sbjct: 698 YSKEFF 703>XP_005266896 Length = 2131 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 5/7 (71%) Query: 1 YSKSFFE 7 Y K FFE Sbjct: 1631 YEKPFFE 1637>XP_005270898 Length = 1154 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKSFFEAA 9 S +FFEAA Sbjct: 632 SLAFFEAA 639>XP_006710687 Length = 1154 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKSFFEAA 9 S +FFEAA Sbjct: 632 SLAFFEAA 639>NP_478144 Length = 873 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSKSFF 6 +SKSFF Sbjct: 597 FSKSFF 602>NP_037416 Length = 494 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KSFFEAA 9 K+FF+AA Sbjct: 467 KTFFQAA 473Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.124 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 425,481 Number of extensions: 720 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |