Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 20 509 NP_001075109 20 509 NP_000520 17 3301 NP_001186020 16 5631 NP_001186014 16 5631 NP_775804 16 5631 NP_001186018 16 5631 NP_001159764 16 5631 NP_003729 16 5631 XP_005244992 16 5631 XP_006711258 16 5631 XP_005244991 16 5631 NP_443099 16 7355 NP_055423 16 7355 NP_001274739 16 7355 NP_001032409 16 7355 NP_001028200 16 7355 NP_112180 16 7355 NP_775922 16 7355 XP_005272600 16 7355 XP_006720008 16 7355 XP_006720007 16 7355 XP_006720006 16 7355 XP_005245569 16 7355 XP_005245568 16 7355 XP_005245567 16 7355 XP_005245566 16 7355 NP_001032410 16 7355 NP_055191 16 7355 NP_056099 15 9605 NP_060596 15 9605 NP_004696 15 9605 XP_005248174 15 9605 XP_005248173 15 9605 XP_006710565 15 9605 XP_006710564 15 9605 XP_005270743 15 9605>NP_008835 Length = 4128 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YMSLFEVLL 9 Y+SLFEVLL Sbjct: 290 YVSLFEVLL 298>NP_001075109 Length = 4097 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YMSLFEVLL 9 Y+SLFEVLL Sbjct: 290 YVSLFEVLL 298>NP_000520 Length = 297 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 YMSLFEV 7 YMSLF+V Sbjct: 254 YMSLFQV 260>NP_001186020 Length = 981 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 ++S+FEVL Sbjct: 172 FLSMFEVL 179>NP_001186014 Length = 1035 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 ++S+FEVL Sbjct: 172 FLSMFEVL 179>NP_775804 Length = 981 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 ++S+FEVL Sbjct: 172 FLSMFEVL 179>NP_001186018 Length = 1035 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 ++S+FEVL Sbjct: 172 FLSMFEVL 179>NP_001159764 Length = 1146 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YMSLFEVLL 9 Y SL+EV L Sbjct: 733 YFSLYEVAL 741>NP_003729 Length = 1203 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YMSLFEVLL 9 Y SL+EV L Sbjct: 733 YFSLYEVAL 741>XP_005244992 Length = 1035 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 ++S+FEVL Sbjct: 172 FLSMFEVL 179>XP_006711258 Length = 1035 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 ++S+FEVL Sbjct: 172 FLSMFEVL 179>XP_005244991 Length = 1035 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 ++S+FEVL Sbjct: 172 FLSMFEVL 179>NP_443099 Length = 1738 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 +MS+F++L Sbjct: 544 FMSMFQIL 551>NP_055423 Length = 1253 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MSLFEVLL 9 +S+FEV+L Sbjct: 1090 LSMFEVIL 1097>NP_001274739 Length = 1253 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MSLFEVLL 9 +S+FEV+L Sbjct: 1090 LSMFEVIL 1097>NP_001032409 Length = 1253 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MSLFEVLL 9 +S+FEV+L Sbjct: 1089 LSMFEVIL 1096>NP_001028200 Length = 822 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MSLFEVLL 9 +S+FEV+L Sbjct: 659 LSMFEVIL 666>NP_112180 Length = 528 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMSLFEVL 8 Y +LFEV+ Sbjct: 317 YFALFEVI 324>NP_775922 Length = 6996 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 YMSLFEV 7 Y+SLF+V Sbjct: 1321 YLSLFDV 1327>XP_005272600 Length = 1253 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MSLFEVLL 9 +S+FEV+L Sbjct: 1090 LSMFEVIL 1097>XP_006720008 Length = 1645 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 +MS+F++L Sbjct: 544 FMSMFQIL 551>XP_006720007 Length = 1709 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 +MS+F++L Sbjct: 515 FMSMFQIL 522>XP_006720006 Length = 1713 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 YMSLFEVL 8 +MS+F++L Sbjct: 544 FMSMFQIL 551>XP_005245569 Length = 355 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMSLFEVL 8 Y +LFEV+ Sbjct: 131 YFALFEVI 138>XP_005245568 Length = 342 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMSLFEVL 8 Y +LFEV+ Sbjct: 131 YFALFEVI 138>XP_005245567 Length = 438 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMSLFEVL 8 Y +LFEV+ Sbjct: 214 YFALFEVI 221>XP_005245566 Length = 541 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMSLFEVL 8 Y +LFEV+ Sbjct: 317 YFALFEVI 324>NP_001032410 Length = 1253 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MSLFEVLL 9 +S+FEV+L Sbjct: 1089 LSMFEVIL 1096>NP_055191 Length = 1253 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MSLFEVLL 9 +S+FEV+L Sbjct: 1089 LSMFEVIL 1096>NP_056099 Length = 3375 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YMSLFEVLL 9 Y SL +VLL Sbjct: 3277 YQSLIKVLL 3285>NP_060596 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSLFEVLL 9 MS+F VLL Sbjct: 110 MSIFPVLL 117>NP_004696 Length = 761 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SLFEVLL 9 SLFE+L+ Sbjct: 168 SLFEILI 174>XP_005248174 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSLFEVLL 9 MS+F VLL Sbjct: 110 MSIFPVLL 117>XP_005248173 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSLFEVLL 9 MS+F VLL Sbjct: 110 MSIFPVLL 117>XP_006710565 Length = 3140 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YMSLFEVLL 9 Y SL +VLL Sbjct: 3042 YQSLIKVLL 3050>XP_006710564 Length = 3432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YMSLFEVLL 9 Y SL +VLL Sbjct: 3334 YQSLIKVLL 3342>XP_005270743 Length = 3453 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YMSLFEVLL 9 Y SL +VLL Sbjct: 3355 YQSLIKVLL 3363Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.342 0.153 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 322,964 Number of extensions: 427 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |