Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055365 20 509 NP_001258358 17 4312 NP_001258357 17 4312 NP_055862 17 4312 NP_001258356 17 4312 XP_005245845 17 4312 XP_005245844 17 4312 NP_001180584 16 5631 NP_001180586 16 5631 NP_001180583 16 5631 NP_001093877 16 5631 NP_001180582 16 5631 NP_001028218 16 5631 NP_001093878 16 5631 XP_006722356 16 5631 NP_060626 15 9605 NP_056193 15 9605>NP_055365 Length = 1032 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YMITMRLAQ 9 YMI MRLAQ Sbjct: 207 YMIAMRLAQ 215>NP_001258358 Length = 971 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MITMRLAQ 9 MIT RLAQ Sbjct: 955 MITKRLAQ 962>NP_001258357 Length = 992 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MITMRLAQ 9 MIT RLAQ Sbjct: 976 MITKRLAQ 983>NP_055862 Length = 993 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MITMRLAQ 9 MIT RLAQ Sbjct: 977 MITKRLAQ 984>NP_001258356 Length = 992 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MITMRLAQ 9 MIT RLAQ Sbjct: 976 MITKRLAQ 983>XP_005245845 Length = 995 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MITMRLAQ 9 MIT RLAQ Sbjct: 979 MITKRLAQ 986>XP_005245844 Length = 996 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MITMRLAQ 9 MIT RLAQ Sbjct: 980 MITKRLAQ 987>NP_001180584 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMITMRLA 8 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001180586 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMITMRLA 8 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001180583 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMITMRLA 8 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001093877 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMITMRLA 8 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001180582 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMITMRLA 8 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001028218 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMITMRLA 8 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001093878 Length = 173 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMITMRLA 8 YM+ +RLA Sbjct: 110 YMVVLRLA 117>XP_006722356 Length = 173 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YMITMRLA 8 YM+ +RLA Sbjct: 110 YMVVLRLA 117>NP_060626 Length = 4363 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YMITMRL 7 YM+ MRL Sbjct: 3223 YMVRMRL 3229>NP_056193 Length = 4388 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YMITMRL 7 YM+ MRL Sbjct: 3248 YMVRMRL 3254Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.345 0.138 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 229,732 Number of extensions: 181 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |