Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004963 20 299 XP_005251512 20 299 NP_004275 17 3301 NP_001243265 17 3301 NP_078844 17 3301 NP_001243267 17 3301 XP_006711702 17 3301 XP_006711701 17 3301 XP_006711700 17 3301 XP_006711699 17 3301 NP_006059 17 4312 XP_005262694 17 4312 XP_005262693 17 4312 NP_958934 15 9605 NP_005536 15 9605>NP_004963 Length = 1132 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YHNMSALMS 9 YHNM ALMS Sbjct: 81 YHNMFALMS 89>XP_005251512 Length = 1132 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YHNMSALMS 9 YHNM ALMS Sbjct: 81 YHNMFALMS 89>NP_004275 Length = 897 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YHNMSAL 7 YH MSAL Sbjct: 279 YHGMSAL 285>NP_001243265 Length = 797 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YHNMSAL 7 YH MSAL Sbjct: 179 YHGMSAL 185>NP_078844 Length = 784 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YHNMSAL 7 YH MSAL Sbjct: 166 YHGMSAL 172>NP_001243267 Length = 693 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YHNMSAL 7 YH MSAL Sbjct: 75 YHGMSAL 81>XP_006711702 Length = 784 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YHNMSAL 7 YH MSAL Sbjct: 166 YHGMSAL 172>XP_006711701 Length = 792 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YHNMSAL 7 YH MSAL Sbjct: 279 YHGMSAL 285>XP_006711700 Length = 803 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YHNMSAL 7 YH MSAL Sbjct: 279 YHGMSAL 285>XP_006711699 Length = 825 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 YHNMSAL 7 YH MSAL Sbjct: 207 YHGMSAL 213>NP_006059 Length = 796 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YHNMSALMS 9 YH + ALM+ Sbjct: 748 YHKLKALMT 756>XP_005262694 Length = 796 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YHNMSALMS 9 YH + ALM+ Sbjct: 748 YHKLKALMT 756>XP_005262693 Length = 796 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YHNMSALMS 9 YH + ALM+ Sbjct: 748 YHKLKALMT 756>NP_958934 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 HNMSAL 7 HN+SAL Sbjct: 119 HNLSAL 124>NP_005536 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 HNMSAL 7 HN+SAL Sbjct: 119 HNLSAL 124Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.116 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 332,241 Number of extensions: 217 Number of successful extensions: 15 Number of sequences better than 10000.0: 15 Number of HSP's gapped: 15 Number of HSP's successfully gapped: 15 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |