Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 19 665 NP_653080 19 665 XP_005267292 19 665 XP_005267291 19 665 XP_005267290 19 665 NP_001278340 16 5631 NP_620305 16 5631 NP_115571 16 5631 XP_006724107 16 5631 XP_006724106 16 5631 NP_109592 15 9605 NP_002839 15 9605 NP_003828 15 9605>NP_005091 Length = 1782 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YETAVTVSE 9 +ETAVTVSE Sbjct: 1360 HETAVTVSE 1368>NP_653080 Length = 1684 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YETAVTVSE 9 +ETAVTVSE Sbjct: 1262 HETAVTVSE 1270>XP_005267292 Length = 1677 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YETAVTVSE 9 +ETAVTVSE Sbjct: 1255 HETAVTVSE 1263>XP_005267291 Length = 1684 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YETAVTVSE 9 +ETAVTVSE Sbjct: 1262 HETAVTVSE 1270>XP_005267290 Length = 1782 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YETAVTVSE 9 +ETAVTVSE Sbjct: 1360 HETAVTVSE 1368>NP_001278340 Length = 2108 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ETAVTVSE 9 E AVTVSE Sbjct: 1449 EPAVTVSE 1456>NP_620305 Length = 2426 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ETAVTVSE 9 E AVTVSE Sbjct: 1449 EPAVTVSE 1456>NP_115571 Length = 2303 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ETAVTVSE 9 E AVTVSE Sbjct: 1449 EPAVTVSE 1456>XP_006724107 Length = 2298 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ETAVTVSE 9 E AVTVSE Sbjct: 1449 EPAVTVSE 1456>XP_006724106 Length = 2459 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ETAVTVSE 9 E AVTVSE Sbjct: 1449 EPAVTVSE 1456>NP_109592 Length = 1216 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 YETAVTVS 8 YE A TVS Sbjct: 581 YEIAATVS 588>NP_002839 Length = 1188 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 YETAVTVS 8 YE A TVS Sbjct: 581 YEIAATVS 588>NP_003828 Length = 339 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 YETAVTVSE 9 Y T V VSE Sbjct: 90 YSTCVLVSE 98Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.294 0.107 0.253 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 275,287 Number of extensions: 411 Number of successful extensions: 13 Number of sequences better than 10000.0: 13 Number of HSP's gapped: 13 Number of HSP's successfully gapped: 13 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |