Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 20 299 NP_001075109 20 299 NP_689914 18 1935 NP_001038188 17 2528 NP_004375 17 2528 NP_001257501 17 2528 NP_001257502 17 2528 NP_001257503 17 2528 NP_001026982 17 2528 NP_001310 17 2528 NP_001919 17 2528 XP_005259559 17 2528 XP_005259558 17 2528 XP_005259557 17 2528 XP_005259556 17 2528 XP_005259555 17 2528 XP_005271953 17 2528 XP_005271952 17 2528 XP_005271951 17 2528 XP_005271950 17 2528 XP_005271949 17 2528 XP_005271948 17 2528 NP_001165907 17 4312 NP_002628 17 4312 NP_001116142 17 4312 NP_000312 17 4312 NP_001091738 17 4312 NP_002303 17 4312 NP_996820 17 4312 XP_006724724 17 4312 XP_006720015 17 4312 XP_005254115 17 4312 XP_005254113 17 4312 XP_005254114 17 4312 XP_006720014 17 4312 XP_006720013 17 4312 NP_001274691 16 5631 NP_001274690 16 5631 NP_004204 16 5631 NP_002824 16 5631 XP_005255050 16 5631 XP_005255048 16 5631 XP_005255046 16 5631 NP_006368 15 9605 XP_006716779 15 9605>NP_008835 Length = 4128 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 YDVLR IFT Sbjct: 2936 YDVLRGIFT 2944>NP_001075109 Length = 4097 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 YDVLR IFT Sbjct: 2936 YDVLRGIFT 2944>NP_689914 Length = 5058 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 YDVL+ +FT Sbjct: 4605 YDVLKWVFT 4613>NP_001038188 Length = 455 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 301 YDYLRKLFT 309>NP_004375 Length = 447 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 301 YDYLRKLFT 309>NP_001257501 Length = 424 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 302 YDYLRKLFT 310>NP_001257502 Length = 348 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 226 YDYLRKLFT 234>NP_001257503 Length = 311 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 189 YDYLRKLFT 197>NP_001026982 Length = 423 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 301 YDYLRKLFT 309>NP_001310 Length = 415 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 305 YDYLRKLFT 313>NP_001919 Length = 253 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 YDVLRAI 7 YDVLRA+ Sbjct: 95 YDVLRAV 101>XP_005259559 Length = 367 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 257 YDYLRKLFT 265>XP_005259558 Length = 392 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 257 YDYLRKLFT 265>XP_005259557 Length = 440 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 305 YDYLRKLFT 313>XP_005259556 Length = 445 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 335 YDYLRKLFT 343>XP_005259555 Length = 445 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 335 YDYLRKLFT 343>XP_005271953 Length = 416 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 302 YDYLRKLFT 310>XP_005271952 Length = 424 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 302 YDYLRKLFT 310>XP_005271951 Length = 447 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 301 YDYLRKLFT 309>XP_005271950 Length = 448 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 302 YDYLRKLFT 310>XP_005271949 Length = 455 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 301 YDYLRKLFT 309>XP_005271948 Length = 456 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD LR +FT Sbjct: 302 YDYLRKLFT 310>NP_001165907 Length = 1151 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD+ + IFT Sbjct: 511 YDIRKTIFT 519>NP_002628 Length = 1223 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD+ + IFT Sbjct: 511 YDIRKTIFT 519>NP_001116142 Length = 1210 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD+ + IFT Sbjct: 511 YDIRKTIFT 519>NP_000312 Length = 928 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 YDVL A+F+ Sbjct: 155 YDVLFALFS 163>NP_001091738 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 Y++L +IFT Sbjct: 386 YEILSSIFT 394>NP_002303 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 Y++L +IFT Sbjct: 386 YEILSSIFT 394>NP_996820 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 Y++L +IFT Sbjct: 386 YEILSSIFT 394>XP_006724724 Length = 1164 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YDVLRAIFT 9 YD+ + IFT Sbjct: 511 YDIRKTIFT 519>XP_006720015 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 Y++L +IFT Sbjct: 386 YEILSSIFT 394>XP_005254115 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 Y++L +IFT Sbjct: 386 YEILSSIFT 394>XP_005254113 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 Y++L +IFT Sbjct: 386 YEILSSIFT 394>XP_005254114 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 Y++L +IFT Sbjct: 386 YEILSSIFT 394>XP_006720014 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 Y++L +IFT Sbjct: 386 YEILSSIFT 394>XP_006720013 Length = 911 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 Y++L +IFT Sbjct: 386 YEILSSIFT 394>NP_001274691 Length = 649 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLRAIFT 9 VLRA+FT Sbjct: 569 VLRALFT 575>NP_001274690 Length = 483 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLRAIFT 9 VLRA+FT Sbjct: 403 VLRALFT 409>NP_004204 Length = 649 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLRAIFT 9 VLRA+FT Sbjct: 569 VLRALFT 575>NP_002824 Length = 593 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 YDVLRAI 7 +DVLRAI Sbjct: 56 FDVLRAI 62>XP_005255050 Length = 623 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLRAIFT 9 VLRA+FT Sbjct: 543 VLRALFT 549>XP_005255048 Length = 649 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLRAIFT 9 VLRA+FT Sbjct: 569 VLRALFT 575>XP_005255046 Length = 649 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLRAIFT 9 VLRA+FT Sbjct: 569 VLRALFT 575>NP_006368 Length = 1591 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 ++V+R +FT Sbjct: 566 FEVIRDVFT 574>XP_006716779 Length = 2399 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 YDVLRAIFT 9 ++V+R +FT Sbjct: 1374 FEVIRDVFT 1382Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.343 0.154 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 338,389 Number of extensions: 617 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |