Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_005269                                                              17    2528
NP_001001996                                                           17    2528
NP_001001995                                                           17    2528
NP_001001994                                                           17    2528
NP_722576                                                              17    2528
XP_005262424                                                           17    2528
XP_005274547                                                           17    2528
XP_005274546                                                           17    2528
NP_694983                                                              17    3301
NP_001273567                                                           17    3301
XP_006719861                                                           17    3301
XP_006719860                                                           17    3301
XP_006719859                                                           17    3301
XP_006719858                                                           17    3301
NP_001001924                                                           16    5631
NP_001001925                                                           16    5631
NP_002909                                                              16    5631
XP_006722894                                                           16    5631
XP_006722893                                                           16    5631
XP_006722892                                                           16    5631
XP_005273640                                                           16    5631
XP_005273639                                                           16    5631
XP_005273638                                                           16    5631
XP_005273637                                                           16    5631
XP_005273636                                                           16    5631
XP_005273635                                                           16    5631
XP_005273634                                                           16    5631
NP_001036040                                                           16    7355
NP_001123481                                                           16    7355
NP_004990                                                              16    7355
NP_872431                                                              16    7355
XP_005248783                                                           16    7355
XP_005248782                                                           16    7355
XP_005248781                                                           16    7355
XP_005248779                                                           16    7355
XP_005248778                                                           16    7355
XP_005248777                                                           16    7355
XP_005248776                                                           16    7355
XP_006713677                                                           16    7355
XP_006712069                                                           16    7355
XP_006712068                                                           16    7355
XP_005262670                                                           16    7355
NP_001230178                                                           15    9605
NP_001258820                                                           15    9605
NP_001258819                                                           15    9605
NP_001230176                                                           15    9605
NP_001025046                                                           15    9605
NP_001034565                                                           15    9605
NP_001070818                                                           15    9605
NP_001230177                                                           15    9605
XP_005248559                                                           15    9605
XP_006714677                                                           15    9605
>NP_005269
          Length = 265

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   YTTSAIK 8
           YTTSA+K
Sbjct: 111 YTTSAVK 117
>NP_001001996
          Length = 305

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   YTTSAIK 8
           YTTSA+K
Sbjct: 151 YTTSAVK 157
>NP_001001995
          Length = 328

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   YTTSAIK 8
           YTTSA+K
Sbjct: 151 YTTSAVK 157
>NP_001001994
          Length = 246

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2  YTTSAIK 8
          YTTSA+K
Sbjct: 92 YTTSAVK 98
>NP_722576
          Length = 3080

 Score = 17.3 bits (33), Expect =  2528
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           V TTSAIKS
Sbjct: 385 VSTTSAIKS 393
>XP_005262424
          Length = 2875

 Score = 17.3 bits (33), Expect =  2528
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           V TTSAIKS
Sbjct: 180 VSTTSAIKS 188
>XP_005274547
          Length = 269

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2  YTTSAIK 8
          YTTSA+K
Sbjct: 92 YTTSAVK 98
>XP_005274546
          Length = 288

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   YTTSAIK 8
           YTTSA+K
Sbjct: 111 YTTSAVK 117
>NP_694983
          Length = 354

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +YTTSA K+
Sbjct: 116 IYTTSASKT 124
>NP_001273567
          Length = 292

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  VYTTSAIKS 9
          +YTTSA K+
Sbjct: 53 IYTTSASKT 61
>XP_006719861
          Length = 286

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  VYTTSAIKS 9
          +YTTSA K+
Sbjct: 37 IYTTSASKT 45
>XP_006719860
          Length = 355

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +YTTSA K+
Sbjct: 116 IYTTSASKT 124
>XP_006719859
          Length = 364

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +YTTSA K+
Sbjct: 116 IYTTSASKT 124
>XP_006719858
          Length = 365

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +YTTSA K+
Sbjct: 116 IYTTSASKT 124
>NP_001001924
          Length = 1270

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TTSAIKS 9
           TTSA+KS
Sbjct: 604 TTSAVKS 610
>NP_001001925
          Length = 1216

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TTSAIKS 9
           TTSA+KS
Sbjct: 604 TTSAVKS 610
>NP_002909
          Length = 979

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   YTTSAIKS 9
           YT SAI+S
Sbjct: 305 YTASAIRS 312
>XP_006722894
          Length = 870

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   YTTSAIKS 9
           YT SAI+S
Sbjct: 196 YTASAIRS 203
>XP_006722893
          Length = 870

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   YTTSAIKS 9
           YT SAI+S
Sbjct: 196 YTASAIRS 203
>XP_006722892
          Length = 979

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   YTTSAIKS 9
           YT SAI+S
Sbjct: 305 YTASAIRS 312
>XP_005273640
          Length = 969

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TTSAIKS 9
           TTSA+KS
Sbjct: 604 TTSAVKS 610
>XP_005273639
          Length = 1216

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TTSAIKS 9
           TTSA+KS
Sbjct: 604 TTSAVKS 610
>XP_005273638
          Length = 1228

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TTSAIKS 9
           TTSA+KS
Sbjct: 604 TTSAVKS 610
>XP_005273637
          Length = 1228

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TTSAIKS 9
           TTSA+KS
Sbjct: 604 TTSAVKS 610
>XP_005273636
          Length = 1270

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TTSAIKS 9
           TTSA+KS
Sbjct: 604 TTSAVKS 610
>XP_005273635
          Length = 1282

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TTSAIKS 9
           TTSA+KS
Sbjct: 604 TTSAVKS 610
>XP_005273634
          Length = 1282

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TTSAIKS 9
           TTSA+KS
Sbjct: 604 TTSAVKS 610
>NP_001036040
          Length = 717

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1  VYTTSA 6
          VYTTSA
Sbjct: 35 VYTTSA 40
>NP_001123481
          Length = 908

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   YTTSAIKS 9
           YT S+IKS
Sbjct: 182 YTMSSIKS 189
>NP_004990
          Length = 1285

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +Y++ AIKS
Sbjct: 106 IYSSEAIKS 114
>NP_872431
          Length = 908

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   YTTSAIKS 9
           YT S+IKS
Sbjct: 182 YTMSSIKS 189
>XP_005248783
          Length = 1253

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +Y++ AIKS
Sbjct: 106 IYSSEAIKS 114
>XP_005248782
          Length = 1262

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +Y++ AIKS
Sbjct: 106 IYSSEAIKS 114
>XP_005248781
          Length = 1272

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +Y++ AIKS
Sbjct: 106 IYSSEAIKS 114
>XP_005248779
          Length = 1276

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +Y++ AIKS
Sbjct: 106 IYSSEAIKS 114
>XP_005248778
          Length = 1281

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +Y++ AIKS
Sbjct: 106 IYSSEAIKS 114
>XP_005248777
          Length = 1285

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +Y++ AIKS
Sbjct: 106 IYSSEAIKS 114
>XP_005248776
          Length = 1294

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           +Y++ AIKS
Sbjct: 106 IYSSEAIKS 114
>XP_006713677
          Length = 717

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1  VYTTSA 6
          VYTTSA
Sbjct: 35 VYTTSA 40
>XP_006712069
          Length = 908

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   YTTSAIKS 9
           YT S+IKS
Sbjct: 182 YTMSSIKS 189
>XP_006712068
          Length = 908

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   YTTSAIKS 9
           YT S+IKS
Sbjct: 182 YTMSSIKS 189
>XP_005262670
          Length = 908

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   YTTSAIKS 9
           YT S+IKS
Sbjct: 182 YTMSSIKS 189
>NP_001230178
          Length = 544

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           + TTSA+K+
Sbjct: 261 IKTTSAVKN 269
>NP_001258820
          Length = 94

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1 VYTTSAIKS 9
         +YTT  +KS
Sbjct: 1 MYTTEMLKS 9
>NP_001258819
          Length = 124

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1 VYTTSAIKS 9
         +YTT  +KS
Sbjct: 1 MYTTEMLKS 9
>NP_001230176
          Length = 491

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           + TTSA+K+
Sbjct: 208 IKTTSAVKN 216
>NP_001025046
          Length = 257

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   VYTTSAIKS 9
           +YTT  +KS
Sbjct: 134 MYTTEMLKS 142
>NP_001034565
          Length = 390

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           + TTSA+K+
Sbjct: 107 IKTTSAVKN 115
>NP_001070818
          Length = 569

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           + TTSA+K+
Sbjct: 286 IKTTSAVKN 294
>NP_001230177
          Length = 544

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VYTTSAIKS 9
           + TTSA+K+
Sbjct: 261 IKTTSAVKN 269
>XP_005248559
          Length = 227

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   VYTTSAIKS 9
           +YTT  +KS
Sbjct: 134 MYTTEMLKS 142
>XP_006714677
          Length = 204

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   VYTTSAIKS 9
           +YTT  +KS
Sbjct: 134 MYTTEMLKS 142
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.303    0.109    0.259 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 338,511
Number of extensions: 421
Number of successful extensions: 52
Number of sequences better than 10000.0: 52
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 52
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.4 bits)
S2: 28 (15.4 bits)

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