Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003473 19 665 NP_733751 19 665 XP_006719679 19 665 XP_005269219 19 665 XP_006719678 19 665 XP_006719677 19 665 XP_006716142 19 665 XP_005250088 19 665 XP_006716141 19 665 XP_005250085 19 665 XP_006716140 19 665 XP_005250084 19 665 XP_005250083 19 665 XP_005250082 19 665 NP_006675 16 5631 NP_066303 16 5631 NP_001160096 16 5631 NP_001188480 16 5631 NP_001188479 16 5631 XP_006711196 16 5631 XP_006711195 16 5631 XP_006711194 16 5631 XP_006711193 16 5631 XP_006711192 16 5631 XP_006711191 16 5631 NP_997191 16 7355 NP_001152956 16 7355 XP_006711682 16 7355>NP_003473 Length = 5537 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 5399 VYLARSRIQ 5407>NP_733751 Length = 4911 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 4773 VYLARSRIQ 4781>XP_006719679 Length = 5536 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 5398 VYLARSRIQ 5406>XP_005269219 Length = 5537 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 5399 VYLARSRIQ 5407>XP_006719678 Length = 5539 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 5401 VYLARSRIQ 5409>XP_006719677 Length = 5540 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 5402 VYLARSRIQ 5410>XP_006716142 Length = 4927 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 4789 VYLARSRIQ 4797>XP_005250088 Length = 4928 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 4790 VYLARSRIQ 4798>XP_006716141 Length = 4959 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 4821 VYLARSRIQ 4829>XP_005250085 Length = 4979 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 4841 VYLARSRIQ 4849>XP_006716140 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 4844 VYLARSRIQ 4852>XP_005250084 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 4844 VYLARSRIQ 4852>XP_005250083 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 4844 VYLARSRIQ 4852>XP_005250082 Length = 4983 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VYLAQSRIQ 9 VYLA+SRIQ Sbjct: 4845 VYLARSRIQ 4853>NP_006675 Length = 331 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 229 VYVPQSRVE 237>NP_066303 Length = 330 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 228 VYVPQSRVE 236>NP_001160096 Length = 269 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 167 VYVPQSRVE 175>NP_001188480 Length = 577 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 475 VYVPQSRVE 483>NP_001188479 Length = 578 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 476 VYVPQSRVE 484>XP_006711196 Length = 519 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 417 VYVPQSRVE 425>XP_006711195 Length = 523 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 421 VYVPQSRVE 429>XP_006711194 Length = 533 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 431 VYVPQSRVE 439>XP_006711193 Length = 568 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 466 VYVPQSRVE 474>XP_006711192 Length = 570 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 468 VYVPQSRVE 476>XP_006711191 Length = 573 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VYLAQSRIQ 9 VY+ QSR++ Sbjct: 471 VYVPQSRVE 479>NP_997191 Length = 1888 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LAQSRIQ 9 LAQSR+Q Sbjct: 1874 LAQSRLQ 1880>NP_001152956 Length = 1736 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LAQSRIQ 9 LAQSR+Q Sbjct: 1722 LAQSRLQ 1728>XP_006711682 Length = 1739 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LAQSRIQ 9 LAQSR+Q Sbjct: 1725 LAQSRLQ 1731Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.133 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 294,728 Number of extensions: 269 Number of successful extensions: 28 Number of sequences better than 10000.0: 28 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 28 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |